BackboneDB.hh File Reference

I little in the spirit of fragments but way more memory and speed efficient. Backbones are stored as 16bit fixed comma integers. :) More...

#include <protocols/loophash/BackboneDB.fwd.hh>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <boost/unordered_map.hpp>
#include <vector>
#include <map>
#include <protocols/frag_picker/VallChunk.fwd.hh>
#include <numeric/geometry/BoundingBox.fwd.hh>
#include <numeric/geometry/hashing/SixDHasher.fwd.hh>

Classes
struct	protocols::loophash::BBExtraData
struct	protocols::loophash::BBData
class	protocols::loophash::BackboneSegment
class	protocols::loophash::BackboneDB

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::loophash

Typedefs
typedef boost::unordered_multimap< boost::uint64_t, core::Size, numeric::geometry::hashing::bin_index_hasher >	protocols::loophash::BackboneIndexMap
typedef numeric::geometry::BoundingBox< core::Vector >	protocols::loophash::BoundingBox

Functions
template<class T >
T	protocols::loophash::sqr (T a)
short	protocols::loophash::RealAngleToShort (core::Real angle)
core::Real	protocols::loophash::ShortToRealAngle (short angle)
core::Real	protocols::loophash::get_rmsd (const BackboneSegment &bs1, const BackboneSegment &bs2)

Variables
const core::Real	protocols::loophash::MAXIMAL_FLOAT = 100000000.0
const int	protocols::loophash::HASH_POSITION_GRID_BASE = 5

Detailed Description

I little in the spirit of fragments but way more memory and speed efficient. Backbones are stored as 16bit fixed comma integers. :)

Author

Mike Tyka

Ken Jung