protocols::sewing::requirements Namespace Reference

Classes
class	AssemblyRequirement
	an interface for making Requirements that deal with Assemblies More...
class	AssemblyRequirementCreator
	The Creator class is responsible for creating a particular GlobalRequirement class. More...
class	AssemblyRequirementFactory
	Create AssemblyRequirements. More...
class	AssemblyRequirementRegistrator
	This templated class will register an instance of an RequirementCreator (class T) with the RequirementFactory. It will ensure that no RequirementCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	ClashRequirement
	a Requirement that an Assembly have less than a certain number of clashes More...
class	ClashRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	DsspSpecificLengthRequirement
	a Requirement that the segments of an Assembly with a specific dssp code be within a certain range of lengths More...
class	DsspSpecificLengthRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	KeepLigandContactsRequirement
	a Requirement that an Assembly have less than a certain number of clashes More...
class	KeepLigandContactsRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	LengthInResiduesRequirement
	a Requirement that an Assembly be within a certain range of lengths More...
class	LengthInResiduesRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	LigandAssemblyRequirement
	an interface for making Requirements that deal with Assemblies More...
class	LigandClashRequirement
	Assembly requirement that clash checks the assembly backbone with its bound ligands. More...
class	LigandClashRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	NonTerminalStartingSegmentRequirement
	a Requirement that an Assembly have less than a certain number of clashes More...
class	NonTerminalStartingSegmentRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...
class	SizeInSegmentsRequirement
	a Requirement that an Assembly be within a certain range of sizes More...
class	SizeInSegmentsRequirementCreator
	The Creator class is responsible for creating a particular Requirement class. More...

Typedefs
typedef utility::pointer::shared_ptr< AssemblyRequirement >	AssemblyRequirementOP
typedef utility::pointer::shared_ptr< AssemblyRequirement const >	AssemblyRequirementCOP
typedef utility::pointer::shared_ptr< AssemblyRequirementCreator >	AssemblyRequirementCreatorOP
typedef utility::pointer::shared_ptr< AssemblyRequirementCreator const >	AssemblyRequirementCreatorCOP
typedef utility::pointer::shared_ptr< ClashRequirement >	ClashRequirementOP
typedef utility::pointer::shared_ptr< ClashRequirement const >	ClashRequirementCOP
typedef utility::pointer::shared_ptr< ClashRequirementCreator >	ClashRequirementCreatorOP
typedef utility::pointer::shared_ptr< ClashRequirementCreator const >	ClashRequirementCreatorCOP
typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirement >	DsspSpecificLengthRequirementOP
typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirement const >	DsspSpecificLengthRequirementCOP
typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirementCreator >	DsspSpecificLengthRequirementCreatorOP
typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirementCreator const >	DsspSpecificLengthRequirementCreatorCOP
typedef utility::pointer::shared_ptr< KeepLigandContactsRequirement >	KeepLigandContactsRequirementOP
typedef utility::pointer::shared_ptr< KeepLigandContactsRequirement const >	KeepLigandContactsRequirementCOP
typedef utility::pointer::shared_ptr< KeepLigandContactsRequirementCreator >	KeepLigandContactsRequirementCreatorOP
typedef utility::pointer::shared_ptr< KeepLigandContactsRequirementCreator const >	KeepLigandContactsRequirementCreatorCOP
typedef utility::pointer::shared_ptr< LengthInResiduesRequirement >	LengthInResiduesRequirementOP
typedef utility::pointer::shared_ptr< LengthInResiduesRequirement const >	LengthInResiduesRequirementCOP
typedef utility::pointer::shared_ptr< LengthInResiduesRequirementCreator >	LengthInResiduesRequirementCreatorOP
typedef utility::pointer::shared_ptr< LengthInResiduesRequirementCreator const >	LengthInResiduesRequirementCreatorCOP
typedef utility::pointer::shared_ptr< LigandAssemblyRequirement >	LigandAssemblyRequirementOP
typedef utility::pointer::shared_ptr< LigandAssemblyRequirement const >	LigandAssemblyRequirementCOP
typedef utility::pointer::shared_ptr< LigandClashRequirement >	LigandClashRequirementOP
typedef utility::pointer::shared_ptr< LigandClashRequirement const >	LigandClashRequirementCOP
typedef utility::pointer::shared_ptr< LigandClashRequirementCreator >	LigandClashRequirementCreatorOP
typedef utility::pointer::shared_ptr< LigandClashRequirementCreator const >	LigandClashRequirementCreatorCOP
typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirement >	NonTerminalStartingSegmentRequirementOP
typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirement const >	NonTerminalStartingSegmentRequirementCOP
typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirementCreator >	NonTerminalStartingSegmentRequirementCreatorOP
typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirementCreator const >	NonTerminalStartingSegmentRequirementCreatorCOP
typedef utility::pointer::shared_ptr< SizeInSegmentsRequirement >	SizeInSegmentsRequirementOP
typedef utility::pointer::shared_ptr< SizeInSegmentsRequirement const >	SizeInSegmentsRequirementCOP
typedef utility::pointer::shared_ptr< SizeInSegmentsRequirementCreator >	SizeInSegmentsRequirementCreatorOP
typedef utility::pointer::shared_ptr< SizeInSegmentsRequirementCreator const >	SizeInSegmentsRequirementCreatorCOP

Functions
static basic::Tracer	TR ("protocols.sewing.requirements.AssemblyRequirementFactory")

Typedef Documentation

AssemblyRequirementCOP

typedef utility::pointer::shared_ptr< AssemblyRequirement const > protocols::sewing::requirements::AssemblyRequirementCOP

AssemblyRequirementCreatorCOP

typedef utility::pointer::shared_ptr< AssemblyRequirementCreator const > protocols::sewing::requirements::AssemblyRequirementCreatorCOP

AssemblyRequirementCreatorOP

typedef utility::pointer::shared_ptr< AssemblyRequirementCreator > protocols::sewing::requirements::AssemblyRequirementCreatorOP

AssemblyRequirementOP

typedef utility::pointer::shared_ptr< AssemblyRequirement > protocols::sewing::requirements::AssemblyRequirementOP

ClashRequirementCOP

typedef utility::pointer::shared_ptr< ClashRequirement const > protocols::sewing::requirements::ClashRequirementCOP

ClashRequirementCreatorCOP

typedef utility::pointer::shared_ptr< ClashRequirementCreator const > protocols::sewing::requirements::ClashRequirementCreatorCOP

ClashRequirementCreatorOP

typedef utility::pointer::shared_ptr< ClashRequirementCreator > protocols::sewing::requirements::ClashRequirementCreatorOP

ClashRequirementOP

typedef utility::pointer::shared_ptr< ClashRequirement > protocols::sewing::requirements::ClashRequirementOP

DsspSpecificLengthRequirementCOP

typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirement const > protocols::sewing::requirements::DsspSpecificLengthRequirementCOP

DsspSpecificLengthRequirementCreatorCOP

typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirementCreator const > protocols::sewing::requirements::DsspSpecificLengthRequirementCreatorCOP

DsspSpecificLengthRequirementCreatorOP

typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirementCreator > protocols::sewing::requirements::DsspSpecificLengthRequirementCreatorOP

DsspSpecificLengthRequirementOP

typedef utility::pointer::shared_ptr< DsspSpecificLengthRequirement > protocols::sewing::requirements::DsspSpecificLengthRequirementOP

KeepLigandContactsRequirementCOP

typedef utility::pointer::shared_ptr< KeepLigandContactsRequirement const > protocols::sewing::requirements::KeepLigandContactsRequirementCOP

KeepLigandContactsRequirementCreatorCOP

typedef utility::pointer::shared_ptr< KeepLigandContactsRequirementCreator const > protocols::sewing::requirements::KeepLigandContactsRequirementCreatorCOP

KeepLigandContactsRequirementCreatorOP

typedef utility::pointer::shared_ptr< KeepLigandContactsRequirementCreator > protocols::sewing::requirements::KeepLigandContactsRequirementCreatorOP

KeepLigandContactsRequirementOP

typedef utility::pointer::shared_ptr< KeepLigandContactsRequirement > protocols::sewing::requirements::KeepLigandContactsRequirementOP

LengthInResiduesRequirementCOP

typedef utility::pointer::shared_ptr< LengthInResiduesRequirement const > protocols::sewing::requirements::LengthInResiduesRequirementCOP

LengthInResiduesRequirementCreatorCOP

typedef utility::pointer::shared_ptr< LengthInResiduesRequirementCreator const > protocols::sewing::requirements::LengthInResiduesRequirementCreatorCOP

LengthInResiduesRequirementCreatorOP

typedef utility::pointer::shared_ptr< LengthInResiduesRequirementCreator > protocols::sewing::requirements::LengthInResiduesRequirementCreatorOP

LengthInResiduesRequirementOP

typedef utility::pointer::shared_ptr< LengthInResiduesRequirement > protocols::sewing::requirements::LengthInResiduesRequirementOP

LigandAssemblyRequirementCOP

typedef utility::pointer::shared_ptr< LigandAssemblyRequirement const > protocols::sewing::requirements::LigandAssemblyRequirementCOP

LigandAssemblyRequirementOP

typedef utility::pointer::shared_ptr< LigandAssemblyRequirement > protocols::sewing::requirements::LigandAssemblyRequirementOP

LigandClashRequirementCOP

typedef utility::pointer::shared_ptr< LigandClashRequirement const > protocols::sewing::requirements::LigandClashRequirementCOP

LigandClashRequirementCreatorCOP

typedef utility::pointer::shared_ptr< LigandClashRequirementCreator const > protocols::sewing::requirements::LigandClashRequirementCreatorCOP

LigandClashRequirementCreatorOP

typedef utility::pointer::shared_ptr< LigandClashRequirementCreator > protocols::sewing::requirements::LigandClashRequirementCreatorOP

LigandClashRequirementOP

typedef utility::pointer::shared_ptr< LigandClashRequirement > protocols::sewing::requirements::LigandClashRequirementOP

NonTerminalStartingSegmentRequirementCOP

typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirement const > protocols::sewing::requirements::NonTerminalStartingSegmentRequirementCOP

NonTerminalStartingSegmentRequirementCreatorCOP

typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirementCreator const > protocols::sewing::requirements::NonTerminalStartingSegmentRequirementCreatorCOP

NonTerminalStartingSegmentRequirementCreatorOP

typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirementCreator > protocols::sewing::requirements::NonTerminalStartingSegmentRequirementCreatorOP

NonTerminalStartingSegmentRequirementOP

typedef utility::pointer::shared_ptr< NonTerminalStartingSegmentRequirement > protocols::sewing::requirements::NonTerminalStartingSegmentRequirementOP

SizeInSegmentsRequirementCOP

typedef utility::pointer::shared_ptr< SizeInSegmentsRequirement const > protocols::sewing::requirements::SizeInSegmentsRequirementCOP

SizeInSegmentsRequirementCreatorCOP

typedef utility::pointer::shared_ptr< SizeInSegmentsRequirementCreator const > protocols::sewing::requirements::SizeInSegmentsRequirementCreatorCOP

SizeInSegmentsRequirementCreatorOP

typedef utility::pointer::shared_ptr< SizeInSegmentsRequirementCreator > protocols::sewing::requirements::SizeInSegmentsRequirementCreatorOP

SizeInSegmentsRequirementOP

typedef utility::pointer::shared_ptr< SizeInSegmentsRequirement > protocols::sewing::requirements::SizeInSegmentsRequirementOP

Function Documentation

TR()

static basic::Tracer protocols::sewing::requirements::TR ( "protocols.sewing.requirements.AssemblyRequirementFactory"  )

static

Referenced by protocols::sewing::requirements::AssemblyRequirementFactory::get_requirement(), protocols::sewing::requirements::ClashRequirement::set_options_from_tag(), protocols::sewing::requirements::DsspSpecificLengthRequirement::set_options_from_tag(), protocols::sewing::requirements::KeepLigandContactsRequirement::set_options_from_tag(), protocols::sewing::requirements::LengthInResiduesRequirement::set_options_from_tag(), protocols::sewing::requirements::LigandClashRequirement::set_options_from_tag(), protocols::sewing::requirements::NonTerminalStartingSegmentRequirement::set_options_from_tag(), protocols::sewing::requirements::SizeInSegmentsRequirement::set_options_from_tag(), protocols::sewing::requirements::ClashRequirement::test(), and protocols::sewing::requirements::LigandClashRequirement::test().