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Rosetta
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Database input/output function declarations for carbohydrate-specific data. More...
#include <core/chemical/carbohydrates/SugarModificationsNomenclatureTable.hh>#include <core/chemical/carbohydrates/LinkageConformers.hh>#include <core/chemical/carbohydrates/CarbohydrateInfoManager.fwd.hh>#include <core/types.hh>#include <map>Namespaces | |
| core | |
| A class for reading in the atom type properties. | |
| core::chemical | |
| core::chemical::carbohydrates | |
Functions | |
| std::string | core::chemical::carbohydrates::find_glycan_sequence_file (std::string filename) |
| Try various combinations to locate the specific glycan sequence file being requested by the user. More... | |
| std::string | core::chemical::carbohydrates::read_glycan_sequence_file (std::string filename) |
| Read a single-line glycan sequence file. More... | |
| std::map< std::string, RootData > | core::chemical::carbohydrates::read_codes_and_roots_from_database_file (std::string const &filename) |
| Return a map of strings to strings, which are saccharide-specific 3-letter codes mapped to IUPAC roots, read from a database file. More... | |
| std::map< core::Size, std::pair< char, std::string > > | core::chemical::carbohydrates::read_ring_sizes_and_morphemes_from_database_file (std::string const &filename) |
| Return a map of Sizes to pairs of char and string, which are ring sizes mapped to 1-letter affixes and morphemes, respectively, read from a database file. More... | |
| SugarModificationsNomenclatureTable | core::chemical::carbohydrates::read_nomenclature_table_from_database_file (std::string const &filename) |
| Return a table of nomenclature data for sugar modifications, read from a database file. More... | |
| LinkageConformers | core::chemical::carbohydrates::read_linkage_conformers_from_database_file (std::string const &filename) |
| Return a map of linkage conformer data, read from a database file. More... | |
| std::map< std::string, std::string > | core::chemical::carbohydrates::read_short_names_to_iupac_format_string (std::string const &dir, std::string common_mapping_path) |
| Return a map of short names to IUPAC formatted strings. Reads from db_dir/common_names.txt and loads the IUPAC files as strings. More... | |
Database input/output function declarations for carbohydrate-specific data.
1.9.1