Directory dependency graph for chemical:
Directories | |
| directory | bcl |
| directory | carbohydrates |
| directory | gasteiger |
| directory | io |
| directory | mainchain_potential |
| directory | mmCIF |
| directory | modifications |
| directory | orbitals |
| directory | rdkit |
| directory | residue_properties |
| directory | rings |
| directory | rna |
| directory | rotamers |
| directory | sdf |
Files | |
| file | AA.cc |
| translation between amino acid enum and string name/one letter char codes | |
| file | AA.hh |
| file | Adduct.cc |
| definition of residue adduct class | |
| file | Adduct.fwd.hh |
| declaration of class for adducts on residues | |
| file | Adduct.hh |
| declaration of implementation class for residue adducts | |
| file | adduct_util.cc |
| file | adduct_util.hh |
| file | Atom.cc |
| file | Atom.fwd.hh |
| Class declaration for chemical::Atom. | |
| file | Atom.hh |
| Method definitions for chemical::Atom. | |
| file | AtomICoor.cc |
| declaration of implementation class for abstract class Residue | |
| file | AtomICoor.fwd.hh |
| declaration of implementation class for abstract class Residue | |
| file | AtomICoor.hh |
| declaration of implementation class for abstract class Residue | |
| file | AtomProperties.cc |
| Method definitions for AtomProperties. | |
| file | AtomProperties.fwd.hh |
| Forward declarations for AtomProperties. | |
| file | AtomProperties.hh |
| Declarations and simple accessor/mutator definitions for AtomProperties. | |
| file | AtomPropertiesManager.cc |
| Method definitions for AtomPropertiesManager. | |
| file | AtomPropertiesManager.fwd.hh |
| Forward declaration for AtomPropertiesManager. | |
| file | AtomPropertiesManager.hh |
| Method declarations for AtomPropertiesManager. | |
| file | AtomProperty.hh |
| Enumeration definitions for AtomProperties. | |
| file | AtomProperty_mappings.cc |
| file | AtomRefMapping.hh |
| A mapping of atom references (vds, indexes, names) to each other. | |
| file | AtomType.cc |
| A class for defining atom parameters, known as atom_types. | |
| file | AtomType.fwd.hh |
| file | AtomType.hh |
| A class for defining atom parameters, known as atom_types. | |
| file | atomtype_support.cc |
| file | atomtype_support.hh |
| file | AtomTypeDatabaseIO.cc |
| Write chemical information associated with atom types to a database. | |
| file | AtomTypeDatabaseIO.fwd.hh |
| file | AtomTypeDatabaseIO.hh |
| file | AtomTypeSet.cc |
| file | AtomTypeSet.fwd.hh |
| file | AtomTypeSet.hh |
| file | automorphism.cc |
| file | automorphism.hh |
| file | Bond.cc |
| file | Bond.fwd.hh |
| file | Bond.hh |
| file | bond_support.cc |
| file | bond_support.hh |
| support functions for class Bond; functions that should not be included as part of the class. | |
| file | CacheableResidueTypeSets.cc |
| A (Pose-cacheable) container for ResidueTypeSets. | |
| file | CacheableResidueTypeSets.fwd.hh |
| A (Pose-cacheable) container for ResidueTypeSets. | |
| file | CacheableResidueTypeSets.hh |
| A (Pose-cacheable) container for ResidueTypeSets. | |
| file | ChemicalManager.cc |
| file | ChemicalManager.fwd.hh |
| file | ChemicalManager.hh |
| Chemical manager class header. | |
| file | ElectronConfiguration.cc |
| file | ElectronConfiguration.fwd.hh |
| file | ElectronConfiguration.hh |
| file | Element.cc |
| The data for the element types. | |
| file | Element.fwd.hh |
| file | Element.hh |
| The data for the element types. | |
| file | Elements.cc |
| file | Elements.hh |
| All the elements known to mankind (me)...as of4/18/2014. | |
| file | ElementSet.cc |
| file | ElementSet.fwd.hh |
| file | ElementSet.hh |
| file | GlobalResidueTypeSet.cc |
| GlobalResidueTypeSet class. | |
| file | GlobalResidueTypeSet.fwd.hh |
| file | GlobalResidueTypeSet.hh |
| file | GreekDistance.hh |
| Enumeration definitions for GreekDistance. | |
| file | icoor_support.cc |
| external support for manipulating the ResidueType's icoor/ideal_xyz | |
| file | icoor_support.hh |
| file | IdealBondLengthSet.cc |
| file | IdealBondLengthSet.fwd.hh |
| file | IdealBondLengthSet.hh |
| file | Metapatch.cc |
| A structure for applying multiple Patches procedurally. | |
| file | Metapatch.fwd.hh |
| file | Metapatch.hh |
| file | MMAtomType.cc |
| Molecular mechanics atom type class. | |
| file | MMAtomType.fwd.hh |
| file | MMAtomType.hh |
| Molecular mechanics atom type class. | |
| file | MMAtomTypeSet.cc |
| file | MMAtomTypeSet.fwd.hh |
| file | MMAtomTypeSet.hh |
| file | MutableChiRecord.cc |
| A Chi record object for a MutableResidueType. | |
| file | MutableChiRecord.fwd.hh |
| A Chi record object for a MutableResidueType. | |
| file | MutableChiRecord.hh |
| A Chi record object for a MutableResidueType. | |
| file | MutableICoorRecord.cc |
| A ICoord record object for a MutableResidueType. | |
| file | MutableICoorRecord.fwd.hh |
| A ICoord record object for a MutableResidueType. | |
| file | MutableICoorRecord.hh |
| A ICoord record object for a MutableResidueType. | |
| file | MutableResidueConnection.cc |
| A class representing a connection point to another residue for a MutableResidueType. | |
| file | MutableResidueConnection.fwd.hh |
| A version of ResidueConnection used with MutableResidueType. | |
| file | MutableResidueConnection.hh |
| Inter-residue chemical bond connection point class declaration. | |
| file | MutableResidueType.cc |
| Method definitions for MutableResidueType. | |
| file | MutableResidueType.fwd.hh |
| declaration of MutableResidueType class | |
| file | MutableResidueType.hh |
| Method declarations and simple accessors/getters for MutableResidueType. | |
| file | NucleotideTools.cc |
| file | NucleotideTools.hh |
| file | Orbital.cc |
| file | Orbital.fwd.hh |
| file | Orbital.hh |
| file | Patch.cc |
| Implementation class for abstract class Residue. | |
| file | Patch.fwd.hh |
| file | Patch.hh |
| file | PatchOperation.cc |
| Polymorphic classes representing the contents of a residue-type patch file. | |
| file | PatchOperation.fwd.hh |
| file | PatchOperation.hh |
| Polymorphic classes representing the contents of a residue-type patch file. | |
| file | PatchOperationFactory.cc |
| Generate PatchOperations from patchfile lines. | |
| file | PatchOperationFactory.fwd.hh |
| file | PatchOperationFactory.hh |
| Construct PatchOperations with a factory creator system. | |
| file | PoseResidueTypeSet.cc |
| A ResidueTypeSet which can be cached in the Pose. | |
| file | PoseResidueTypeSet.fwd.hh |
| A ResidueTypeSet which can be cached in the Pose. | |
| file | PoseResidueTypeSet.hh |
| A ResidueTypeSet which can be cached in the Pose. | |
| file | ResConnID.cc |
| file | ResConnID.fwd.hh |
| file | ResConnID.hh |
| file | residue_io.cc |
| helper methods for ResidueType input/output | |
| file | residue_io.hh |
| file | residue_support.cc |
| file | residue_support.hh |
| support functions for class residue; functions that should not be included as part of the class. | |
| file | ResidueConnection.cc |
| Auto-generated serialization template functions. | |
| file | ResidueConnection.fwd.hh |
| declaration of implementation class for abstract class Residue | |
| file | ResidueConnection.hh |
| Inter-residue chemical bond connection point class declaration. | |
| file | ResidueDatabaseIO.cc |
| file | ResidueDatabaseIO.fwd.hh |
| file | ResidueDatabaseIO.hh |
| file | ResidueGraphTypes.hh |
| Graph structure for ResidueType. | |
| file | ResidueGraphTypes.srlz.hh |
| Helper functions for serializing objects in ResidueGraphTypes.hh and associated. | |
| file | ResidueProperties.cc |
| Method definitions for ResidueProperties. | |
| file | ResidueProperties.fwd.hh |
| Forward declarations for ResidueProperties. | |
| file | ResidueProperties.hh |
| Declarations and simple accessor/mutator definitions for ResidueProperties. | |
| file | ResidueProperty.hh |
| Enumeration definition for ResidueProperty. | |
| file | ResidueProperty_mappings.cc |
| Method definitions for private singleton methods declared in AtomPropertiesManager.hh. | |
| file | ResidueSubGraphTypes.cc |
| file | ResidueSubGraphTypes.hh |
| Filtered subgraphs. | |
| file | ResidueType.cc |
| Method definitions for ResidueType. | |
| file | ResidueType.fwd.hh |
| declaration of implementation class for abstract class Residue | |
| file | ResidueType.hh |
| Method declarations and simple accessors/getters for ResidueType. | |
| file | ResidueType.srlz.cc |
| Serialization and deserialization routines for when working with globally-accessible ResidueTypes. | |
| file | ResidueType.srlz.hh |
| Serialization and deserialization routines for when working with globally-accessible ResidueTypes. | |
| file | ResidueTypeBase.cc |
| Method definitions for ResidueTypeBase. | |
| file | ResidueTypeBase.fwd.hh |
| declaration of implementation class for abstract class Residue | |
| file | ResidueTypeBase.hh |
| Method declarations and simple accessors/getters for ResidueTypeBase. | |
| file | ResidueTypeFinder.cc |
| file | ResidueTypeFinder.fwd.hh |
| file | ResidueTypeFinder.hh |
| Functions to find residue_type(s) from ResidueTypeSet without requiring instantiation of all rsd_types. | |
| file | ResidueTypeKinWriter.cc |
| Class to write kinemage-formatted output for Residue and chemical. | |
| file | ResidueTypeKinWriter.fwd.hh |
| file | ResidueTypeKinWriter.hh |
| Class to write kinemage-formatted output for ResidueType. | |
| file | ResidueTypeSelector.cc |
| file | ResidueTypeSelector.fwd.hh |
| file | ResidueTypeSelector.hh |
| file | ResidueTypeSet.cc |
| ResidueTypeSet class. | |
| file | ResidueTypeSet.fwd.hh |
| file | ResidueTypeSet.hh |
| file | ResidueTypeSet.srlz.cc |
| Serialization and deserialization routines for when working with ResidueTypeSets. | |
| file | ResidueTypeSet.srlz.hh |
| Serialization and deserialization routines for when working with ResidueTypeSets. | |
| file | ResidueTypeSetCache.cc |
| file | ResidueTypeSetCache.fwd.hh |
| file | ResidueTypeSetCache.hh |
| file | RestypeDestructionEvent.fwd.hh |
| forward declaration for core::chemical::RestypeDestructionEvent | |
| file | RestypeDestructionEvent.hh |
| file | types.hh |
| rosetta project type declarations | |
| file | util.cc |
| Utilities for modifying and utilizing ResidueTypes and other core::chemical classes. | |
| file | util.hh |
| Utilities for modifying and utilizing Residues and other core::chemical classes. | |
| file | VariantType.hh |
| Enumeration definition for VariantType. | |
| file | VariantType_mappings.cc |
| Method definitions for private static methods declared in ResidueProperties.hh. | |
