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Rosetta
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translation between amino acid enum and string name/one letter char codes More...
#include <core/chemical/AA.hh>#include <utility/exit.hh>#include <map>#include <string>#include <utility/vector1.hh>#include <sstream>Namespaces | |
| core | |
| A class for reading in the atom type properties. | |
| core::chemical | |
Functions | |
| std::map< std::string, AA > | core::chemical::setup_name2aa () |
| setup the map that converts string name to AA enum More... | |
| std::map< char, AA > | core::chemical::setup_oneletter2aa () |
| setup the map the converts one letter char to AA enum More... | |
| std::map< std::string, AA > const & | core::chemical::name2aa () |
| map that converts string name to AA enum More... | |
| std::map< char, AA > const & | core::chemical::oneletter2aa () |
| map that converts one letter char to AA enum More... | |
| utility::vector1< std::string > | core::chemical::setup_aa2name () |
| setup the vector that maps AA enum to string name More... | |
| utility::vector1< std::string > const & | core::chemical::aa2name () |
| vector that maps AA enum to string name More... | |
| utility::vector1< char > | core::chemical::setup_aa2oneletter () |
| setup the vector that maps AA enum to one letter char More... | |
| utility::vector1< char > const & | core::chemical::aa2oneletter () |
| vector that maps AA enum to one letter char More... | |
| AA | core::chemical::aa_from_name (std::string const &name) |
| Give an AA string 3-letter code, return its enum type. More... | |
| AA | core::chemical::aa_from_one_or_three (std::string const &name) |
| bool | core::chemical::is_canonical_D_aa (AA const aa) |
| Give an enum type, return true if and only if it is a D-amino acid that is the mirror image of a canonical alpha-L-amino acid. More... | |
| bool | core::chemical::is_canonical_L_aa_excluding_gly (AA const aa) |
| Give an enum type, return true if and only if it is an L-amino acid of a canonical type. More... | |
| bool | core::chemical::is_canonical_L_aa_or_gly (AA const aa) |
| Given an enum type, return true if and only if it is a canonical L-amino acid. Rocco approves. More... | |
| bool | core::chemical::is_canonical_beta3_aa (AA const aa) |
| Given an enum type, return true if and only if it is a canonical beta-amino acid. More... | |
| bool | core::chemical::is_aa_name_unknown (std::string const &name) |
| Given aa three letter string, return true if it is an unknown aa. More... | |
| AA | core::chemical::get_L_equivalent (AA const aa) |
| Given an enum type for a D-amino acid with a canonical side-chain, return the enum type for the corresponding L-amino acid (or aa_unk if the corresponding L-amino acid cannot be determined). More... | |
| AA | core::chemical::get_D_equivalent (AA const aa) |
| Given an enum type for a L-amino acid with a canonical side-chain, return the enum type for the corresponding D-amino acid (or aa_unk if the corresponding D-amino acid cannot be determined). More... | |
| std::istream & | core::chemical::operator>> (std::istream &is, AA &aa) |
| input operator for AA enum type More... | |
| std::ostream & | core::chemical::operator<< (std::ostream &os, AA const &aa) |
| output operator for AA enum type More... | |
| std::string | core::chemical::name_from_aa (AA aa) |
| give a enum type and return the string name More... | |
| std::string | core::chemical::full_name_from_aa (AA aa) |
| give the canonical "full" ResidueType name for given AA More... | |
| char | core::chemical::oneletter_code_from_aa (AA aa) |
| give a enum type and return the string name More... | |
| AA | core::chemical::aa_from_oneletter_code (char onelettercode) |
| give a 1 letter code and return the string name More... | |
| bool | core::chemical::oneletter_code_specifies_aa (char onelettercode) |
translation between amino acid enum and string name/one letter char codes
1.9.1