GlycopeptideDockingProtocol.hh File Reference

A protocol to dock peptide or glycosylate peptide in the glycopeptide_docking site of a glycosyltransferase. The protocol is designed for O-linked glycopeptide_docking in which sugar are transferred one-at-a-time by specific glycosytransferases to a peptide (or glycopeptide) or protein substrate from a nucleatide donor (eg. UDP-GalNAc) The current version of the protocol has been tested on GalNAcT transferases that add the first sugar in the O-linked pathway. The protocol is in active development for extension to other enzymes in the O-glycopeptide_docking pathway. Currently, the protocol requires the pose to contain the enzyme, activated sugar (or just UDP), and a peptide substrate. More...

#include <protocols/glycopeptide_docking/GlycopeptideDockingProtocol.fwd.hh>
#include <protocols/glycopeptide_docking/GlycopeptideDockingFlags.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/constraint_movers/ConstraintSetMover.fwd.hh>
#include <protocols/moves/MonteCarlo.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <basic/datacache/DataMap.fwd.hh>
#include <string>

Classes
class	protocols::glycopeptide_docking::GlycopeptideDockingProtocol
	A protocol to predict glycosylation and elongation of glycans. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::glycopeptide_docking

Functions
std::ostream &	protocols::glycopeptide_docking::operator<< (std::ostream &os, GlycopeptideDockingProtocol const &mover)

Detailed Description

A protocol to dock peptide or glycosylate peptide in the glycopeptide_docking site of a glycosyltransferase. The protocol is designed for O-linked glycopeptide_docking in which sugar are transferred one-at-a-time by specific glycosytransferases to a peptide (or glycopeptide) or protein substrate from a nucleatide donor (eg. UDP-GalNAc) The current version of the protocol has been tested on GalNAcT transferases that add the first sugar in the O-linked pathway. The protocol is in active development for extension to other enzymes in the O-glycopeptide_docking pathway. Currently, the protocol requires the pose to contain the enzyme, activated sugar (or just UDP), and a peptide substrate.

Author

Yashes Srinivasan (yashe.nosp@m.ss@g.nosp@m.mail..nosp@m.com)