This function is specific to the original system for which this code was written
References protocols::jd2::add_string_real_pair_to_current_job(), protocols::jd2::add_string_to_current_job(), core::conformation::Residue::atom(), core::conformation::Conformation::chain_begin(), core::pose::Pose::conformation(), core::conformation::Conformation::delete_residue_range_slow(), core::conformation::Conformation::num_chains(), core::pose::Pose::pdb_info(), core::pose::Pose::residue(), core::pose::Pose::size(), core::pose::Pose::split_by_chain(), and core::conformation::Atom::xyz().
Referenced by protocols::floppy_tail::FloppyTailMover::apply().