protocols::esm_perplexity Namespace Reference

Classes
class	EsmPerplexityTensorflowProtocol
	Protocol to predict amino acid probabilities using the ESM language model family. More...
class	PerResidueEsmProbabilitiesMetric
	A metric for estimating the amino acid probabilities using the ESM language model family. More...
class	PerResidueEsmProbabilitiesMetricCreator
class	PseudoPerplexityMetric
	A metric for calculating the (pseudo-)perplexity of a sequence. More...
class	PseudoPerplexityMetricCreator

Typedefs
using	EsmPerplexityTensorflowProtocolOP = utility::pointer::shared_ptr< EsmPerplexityTensorflowProtocol >
using	EsmPerplexityTensorflowProtocolCOP = utility::pointer::shared_ptr< EsmPerplexityTensorflowProtocol const >
using	PerResidueEsmProbabilitiesMetricOP = utility::pointer::shared_ptr< PerResidueEsmProbabilitiesMetric >
using	PerResidueEsmProbabilitiesMetricCOP = utility::pointer::shared_ptr< PerResidueEsmProbabilitiesMetric const >
using	PseudoPerplexityMetricOP = utility::pointer::shared_ptr< PseudoPerplexityMetric >
using	PseudoPerplexityMetricCOP = utility::pointer::shared_ptr< PseudoPerplexityMetric const >

Typedef Documentation

EsmPerplexityTensorflowProtocolCOP

using protocols::esm_perplexity::EsmPerplexityTensorflowProtocolCOP = typedef utility::pointer::shared_ptr< EsmPerplexityTensorflowProtocol const >

EsmPerplexityTensorflowProtocolOP

using protocols::esm_perplexity::EsmPerplexityTensorflowProtocolOP = typedef utility::pointer::shared_ptr< EsmPerplexityTensorflowProtocol >

PerResidueEsmProbabilitiesMetricCOP

using protocols::esm_perplexity::PerResidueEsmProbabilitiesMetricCOP = typedef utility::pointer::shared_ptr< PerResidueEsmProbabilitiesMetric const >

PerResidueEsmProbabilitiesMetricOP

using protocols::esm_perplexity::PerResidueEsmProbabilitiesMetricOP = typedef utility::pointer::shared_ptr< PerResidueEsmProbabilitiesMetric >

PseudoPerplexityMetricCOP

using protocols::esm_perplexity::PseudoPerplexityMetricCOP = typedef utility::pointer::shared_ptr< PseudoPerplexityMetric const >

PseudoPerplexityMetricOP

using protocols::esm_perplexity::PseudoPerplexityMetricOP = typedef utility::pointer::shared_ptr< PseudoPerplexityMetric >