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Rosetta
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Atom pair energy functions. More...
#include <core/scoring/ScoreFunction.hh>#include <algorithm>#include <string>#include <sstream>#include <vector>#include <boost/algorithm/string/join.hpp>#include <boost/format.hpp>#include <core/scoring/Energies.hh>#include <core/scoring/EnergiesCacheableDataType.hh>#include <core/scoring/EnergyGraph.hh>#include <core/scoring/LREnergyContainer.hh>#include <core/scoring/MinimizationGraph.hh>#include <core/scoring/ScoreFunctionInfo.hh>#include <core/scoring/ScoreTypeManager.hh>#include <core/scoring/ScoringManager.hh>#include <core/scoring/hbonds/HBondOptions.hh>#include <core/scoring/hbonds/HBondSet.hh>#include <core/scoring/hbonds/hbonds.hh>#include <core/scoring/methods/ContextDependentLRTwoBodyEnergy.hh>#include <core/scoring/methods/ContextDependentOneBodyEnergy.hh>#include <core/scoring/methods/ContextDependentTwoBodyEnergy.hh>#include <core/scoring/methods/ContextIndependentLRTwoBodyEnergy.hh>#include <core/scoring/methods/ContextIndependentOneBodyEnergy.hh>#include <core/scoring/methods/ContextIndependentTwoBodyEnergy.hh>#include <core/scoring/methods/EnergyMethod.hh>#include <core/scoring/methods/EnergyMethodOptions.hh>#include <core/scoring/methods/FreeDOF_Options.hh>#include <core/scoring/methods/TwoBodyEnergy.hh>#include <core/scoring/methods/WholeStructureEnergy.hh>#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>#include <core/scoring/rna/RNA_EnergyMethodOptions.hh>#include <core/scoring/symmetry/SymmetricEnergies.hh>#include <core/kinematics/MinimizerMapBase.hh>#include <core/id/DOF_ID.hh>#include <core/id/TorsionID.hh>#include <core/conformation/Residue.hh>#include <core/conformation/symmetry/SymmetricConformation.hh>#include <core/conformation/symmetry/SymmetryInfo.hh>#include <core/pose/symmetry/util.hh>#include <core/pose/Pose.hh>#include <core/scoring/EnvPairPotential.hh>#include <core/pose/datacache/CacheableDataType.hh>#include <basic/prof.hh>#include <basic/Tracer.hh>#include <basic/database/open.hh>#include <basic/citation_manager/CitationCollectionBase.hh>#include <numeric/random/DistributionSampler.hh>#include <utility/io/izstream.hh>#include <utility/io/GeneralFileManager.hh>#include <utility/options/OptionCollection.fwd.hh>#include <utility/options/keys/OptionKeyList.fwd.hh>#include <utility/vector1.hh>#include <ObjexxFCL/format.hh>Namespaces | |
| core | |
| A class for reading in the atom type properties. | |
| core::scoring | |
Functions | |
| static basic::Tracer | tr ("core.scoring.ScoreFunction") |
| Basic headers. More... | |
| void | core::scoring::show_detail (std::ostream &out, EnergyMap &energies, EnergyMap weights) |
| template<class T > | |
| void | core::scoring::vector1_remove (utility::vector1< T > &v, T const &t) |
| private – handles setting the derived data More... | |
| std::string | core::scoring::find_weights_file (std::string const &name, std::string const &extension) |
| Utility function to locate a weights or patch file, either with a fully qualified path, in the local directory, or in the database. Names may be passed either with or without the optional extension. More... | |
Atom pair energy functions.
ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.
ScoreFunction class definition.
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static |
Basic headers.
1.9.1