protocols::chemistries Namespace Reference

Classes
class	Chemistry
class	ChemistryCreator
class	ChemistryFactory
class	ChemistryLoader
	A class for loading arbitrary data into the XML chemistries's basic::datacache::DataMap. More...
class	ChemistryLoaderCreator
class	ChemistryRegistrator
	This templated class will register an instance of an ChemistryCreator (class T) with the ChemistryFactory. It will ensure that no ChemistryCreator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
class	PatchChemistry
class	PatchChemistryCreator
class	WrappedBaseChemistry

Typedefs
typedef utility::pointer::shared_ptr< Chemistry >	ChemistryOP
typedef utility::pointer::shared_ptr< Chemistry const >	ChemistryCOP
typedef utility::pointer::shared_ptr< ChemistryCreator >	ChemistryCreatorOP
typedef utility::pointer::shared_ptr< ChemistryCreator const >	ChemistryCreatorCOP
typedef utility::pointer::shared_ptr< PatchChemistry >	PatchChemistryOP
typedef utility::pointer::shared_ptr< PatchChemistry const >	PatchChemistryCOP

Functions
static basic::Tracer	TR ("protocols.chemistries.ChemistryFactory")
static basic::Tracer	TR ("protocols.chemistries.ChemistryLoader")
static basic::Tracer	TR ("protocols.chemistry.PatchChemistry")
std::string	complex_type_name_for_chemistry (std::string const &chem_type)
	Used to name the xs:complexType for a chemistry that is created with the "chem_type" tag-name. Does so by prepending "chemistry_" and appending "Type" to the "chem_type". More...
void	xsd_type_definition_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &chem_type, std::string const &chem_description, utility::tag::AttributeList const &attributes)
	Define the XML schema definition for a Chemistry which possibly contains attributes/options, but no sub-tags. More...
void	xsd_type_definition_w_attributes_and_repeatable_subelements (utility::tag::XMLSchemaDefinition &xsd, std::string const &chem_type, std::string const &description, utility::tag::AttributeList const &attributes, utility::tag::XMLSchemaSimpleSubelementList const &subelements)
	Define the XML schema definition for a Chemistry that contains subtags and attributes (aka options). More...

Typedef Documentation

ChemistryCOP

typedef utility::pointer::shared_ptr<Chemistry const> protocols::chemistries::ChemistryCOP

ChemistryCreatorCOP

typedef utility::pointer::shared_ptr< ChemistryCreator const > protocols::chemistries::ChemistryCreatorCOP

ChemistryCreatorOP

typedef utility::pointer::shared_ptr< ChemistryCreator > protocols::chemistries::ChemistryCreatorOP

ChemistryOP

typedef utility::pointer::shared_ptr<Chemistry> protocols::chemistries::ChemistryOP

PatchChemistryCOP

typedef utility::pointer::shared_ptr< PatchChemistry const > protocols::chemistries::PatchChemistryCOP

PatchChemistryOP

typedef utility::pointer::shared_ptr< PatchChemistry > protocols::chemistries::PatchChemistryOP

Function Documentation

complex_type_name_for_chemistry()

std::string protocols::chemistries::complex_type_name_for_chemistry

(

std::string const &

chem_type

)

Used to name the xs:complexType for a chemistry that is created with the "chem_type" tag-name. Does so by prepending "chemistry_" and appending "Type" to the "chem_type".

Referenced by protocols::chemistries::ChemistryFactory::define_chemistry_xml_schema(), xsd_type_definition_w_attributes(), and xsd_type_definition_w_attributes_and_repeatable_subelements().

TR() [1/3]

static basic::Tracer protocols::chemistries::TR ( "protocols.chemistries.ChemistryFactory"  )

static

Referenced by protocols::chemistries::PatchChemistry::apply(), protocols::chemistries::PatchChemistry::apply_operations(), protocols::chemistries::PatchChemistry::apply_patch(), protocols::chemistries::ChemistryFactory::new_chemistry(), and protocols::chemistries::PatchChemistry::parse_my_tag().

TR() [2/3]

static basic::Tracer protocols::chemistries::TR ( "protocols.chemistries.ChemistryLoader"  )

static

TR() [3/3]

static basic::Tracer protocols::chemistries::TR ( "protocols.chemistry.PatchChemistry"  )

static

xsd_type_definition_w_attributes()

void protocols::chemistries::xsd_type_definition_w_attributes	(	utility::tag::XMLSchemaDefinition &	xsd,
		std::string const &	chem_type,
		std::string const &	description,
		utility::tag::AttributeList const &	attributes
	)

Define the XML schema definition for a Chemistry which possibly contains attributes/options, but no sub-tags.

References complex_type_name_for_chemistry().

xsd_type_definition_w_attributes_and_repeatable_subelements()

void protocols::chemistries::xsd_type_definition_w_attributes_and_repeatable_subelements	(	utility::tag::XMLSchemaDefinition &	xsd,
		std::string const &	chem_type,
		std::string const &	description,
		utility::tag::AttributeList const &	attributes,
		utility::tag::XMLSchemaSimpleSubelementList const &	subelements
	)

Define the XML schema definition for a Chemistry that contains subtags and attributes (aka options).

References complex_type_name_for_chemistry().

Referenced by protocols::chemistries::PatchChemistry::provide_xml_schema().