LayerDesignOperation.hh File Reference

Design residues with selected amino acids depending on the enviroment: layer. The layer of each residue is assigned as core, boundary, or surface, which are defined by accessible surface of mainchain + CB. If resfile is read before calling this operation, this operation is not applied for the residues defined by PIKAA. More...

#include <protocols/flxbb/LayerDesignOperation.fwd.hh>
#include <protocols/parser/BluePrint.fwd.hh>
#include <core/select/util/SelectResiduesByLayer.fwd.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <core/types.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/tag/XMLSchemaGeneration.fwd.hh>
#include <utility/vector1.hh>
#include <string>
#include <map>

Classes
class	protocols::flxbb::LayerDesignOperation
class	protocols::flxbb::CombinedTaskOperation

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::flxbb

Typedefs
typedef utility::pointer::shared_ptr< CombinedTaskOperation >	protocols::flxbb::CombinedTaskOperationOP

Detailed Description

Design residues with selected amino acids depending on the enviroment: layer. The layer of each residue is assigned as core, boundary, or surface, which are defined by accessible surface of mainchain + CB. If resfile is read before calling this operation, this operation is not applied for the residues defined by PIKAA.

Author

Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.uw.ed.nosp@m.u ) @modified Javier Castellanos (javie.nosp@m.rcv@.nosp@m.uw.ed.nosp@m.u ) @modified Vikram K. Mulligan (vmull.nosp@m.ig@u.nosp@m.w.edu) – support for noncanonicals, now deprecated.