protocols::jd2::archive Namespace Reference

Classes
class	AbstractArchiveBase
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	ArchiveBase
class	EXCN_Archive
class	Batch
	a Batch represents a directory "batch_000xxx" that contains flags, broker-setup input-files and output-files @detail the Batch-class helps to get the correct file- and directory names, and has some knowledge about its status: finished, unfinished ... decoys already processed by Archive More...
class	BaseArchiveManager
	ArchiveManager is responsible for communication with JobDistributor and organization of Batches and returning decoys @detail he owns an Archive (AbstractArchiveBase) that will be handed the decoys and is asked to generate_batch() if the QUEUE_EMPTY . More...
class	ArchiveManager
	ArchiveManager is responsible for communication with JobDistributor and organization of Batches and returning decoys @detail he owns an Archive (AbstractArchiveBase) that will be handed the decoys and is asked to generate_batch() if the QUEUE_EMPTY . More...
class	SortPredicate
class	EvaluatedArchive
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	MPIArchiveJobDistributor
	JobDistributor for the iterative ArchiveManager/Archive Framework. More...
class	NormalizedEvaluatedArchive
	Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input. More...
class	VarianceStatisticsArchive

Typedefs
typedef utility::pointer::shared_ptr< AbstractArchiveBase >	AbstractArchiveBaseOP
typedef utility::pointer::shared_ptr< AbstractArchiveBase const >	AbstractArchiveBaseCOP
typedef utility::pointer::shared_ptr< ArchiveBase >	ArchiveBaseOP
typedef utility::pointer::shared_ptr< ArchiveBase const >	ArchiveBaseCOP
typedef utility::pointer::shared_ptr< ArchiveManager >	ArchiveManagerOP
typedef utility::pointer::shared_ptr< ArchiveManager const >	ArchiveManagerCOP
typedef ArchiveManager *	ArchiveManagerAP
typedef BaseArchiveManager *	BaseArchiveManagerAP
typedef utility::pointer::weak_ptr< ArchiveManager const >	ArchiveManagerCAP
typedef utility::pointer::shared_ptr< VarianceStatisticsArchive >	VarianceStatisticsArchiveOP
typedef utility::pointer::shared_ptr< VarianceStatisticsArchive const >	VarianceStatisticsArchiveCOP

Functions
std::ostream &	operator<< (std::ostream &out, Batch const &batch)
void	report_tag_error (Batch &batch, std::string const &expected_tag, std::string const &tag)
void	report_value_error (Batch &batch, std::string const &tag)
std::istream &	operator>> (std::istream &in, Batch &batch)
void	report_batch_inconsistency (Batch &new_batch, std::string const &tag)
int const	in_master_rank_ (1)
	our setup of dedicated processes... More...
int const	in_file_buf_rank_ (0)
int const	in_archive_rank_ (2)
int const	in_min_client_rank_ (3)

Variables
core::Size const	BATCH_SYNC = 101
core::Size const	QUEUE_EMPTY = 102
core::Size const	ADD_BATCH = 103
core::Size const	CANCEL_BATCH = 104
core::Size const	JOB_COMPLETION = 105
core::Size const	MPI_ARCHIVE_TAG = 12310925

Typedef Documentation

AbstractArchiveBaseCOP

typedef utility::pointer::shared_ptr< AbstractArchiveBase const > protocols::jd2::archive::AbstractArchiveBaseCOP

AbstractArchiveBaseOP

typedef utility::pointer::shared_ptr< AbstractArchiveBase > protocols::jd2::archive::AbstractArchiveBaseOP

ArchiveBaseCOP

typedef utility::pointer::shared_ptr< ArchiveBase const > protocols::jd2::archive::ArchiveBaseCOP

ArchiveBaseOP

typedef utility::pointer::shared_ptr< ArchiveBase > protocols::jd2::archive::ArchiveBaseOP

ArchiveManagerAP

typedef ArchiveManager* protocols::jd2::archive::ArchiveManagerAP

ArchiveManagerCAP

typedef utility::pointer::weak_ptr< ArchiveManager const > protocols::jd2::archive::ArchiveManagerCAP

ArchiveManagerCOP

typedef utility::pointer::shared_ptr< ArchiveManager const > protocols::jd2::archive::ArchiveManagerCOP

ArchiveManagerOP

typedef utility::pointer::shared_ptr< ArchiveManager > protocols::jd2::archive::ArchiveManagerOP

BaseArchiveManagerAP

typedef BaseArchiveManager* protocols::jd2::archive::BaseArchiveManagerAP

VarianceStatisticsArchiveCOP

typedef utility::pointer::shared_ptr<VarianceStatisticsArchive const> protocols::jd2::archive::VarianceStatisticsArchiveCOP

VarianceStatisticsArchiveOP

typedef utility::pointer::shared_ptr<VarianceStatisticsArchive> protocols::jd2::archive::VarianceStatisticsArchiveOP

Function Documentation

in_archive_rank_()

int const protocols::jd2::archive::in_archive_rank_

(

2

)

in_file_buf_rank_()

int const protocols::jd2::archive::in_file_buf_rank_

(

0

)

in_master_rank_()

int const protocols::jd2::archive::in_master_rank_

(

1

)

our setup of dedicated processes...

in_min_client_rank_()

int const protocols::jd2::archive::in_min_client_rank_

(

3

)

operator<<()

std::ostream& protocols::jd2::archive::operator<<	(	std::ostream &	out,
		Batch const &	batch
	)

operator>>()

std::istream& protocols::jd2::archive::operator>>	(	std::istream &	in,
		Batch &	batch
	)

report_batch_inconsistency()

void protocols::jd2::archive::report_batch_inconsistency	(	Batch &	new_batch,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

Referenced by protocols::jd2::archive::BaseArchiveManager::finalize_batch().

report_tag_error()

void protocols::jd2::archive::report_tag_error	(	Batch &	batch,
		std::string const &	expected_tag,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

report_value_error()

void protocols::jd2::archive::report_value_error	(	Batch &	batch,
		std::string const &	tag
	)

References protocols::jd2::archive::Batch::batch().

Variable Documentation

ADD_BATCH

core::Size const protocols::jd2::archive::ADD_BATCH = 103

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), protocols::jd2::archive::MPIArchiveJobDistributor::process_message(), protocols::jd2::archive::ArchiveManager::queue_batch(), and protocols::jd2::archive::MPIArchiveJobDistributor::sync_batches().

BATCH_SYNC

core::Size const protocols::jd2::archive::BATCH_SYNC = 101

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), and protocols::jd2::archive::MPIArchiveJobDistributor::process_message().

CANCEL_BATCH

core::Size const protocols::jd2::archive::CANCEL_BATCH = 104

Referenced by protocols::jd2::archive::ArchiveManager::cancel_batch(), and protocols::jd2::archive::MPIArchiveJobDistributor::process_message().

JOB_COMPLETION

core::Size const protocols::jd2::archive::JOB_COMPLETION = 105

Referenced by protocols::jd2::archive::ArchiveManager::go().

MPI_ARCHIVE_TAG

core::Size const protocols::jd2::archive::MPI_ARCHIVE_TAG = 12310925

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::_notify_archive(), protocols::jd2::archive::ArchiveManager::go(), and protocols::jd2::archive::MPIArchiveJobDistributor::master_to_archive().

QUEUE_EMPTY

core::Size const protocols::jd2::archive::QUEUE_EMPTY = 102

Referenced by protocols::jd2::archive::MPIArchiveJobDistributor::batch_underflow(), protocols::jd2::archive::MPIArchiveJobDistributor::CompletionMessage::CompletionMessage(), and protocols::jd2::archive::ArchiveManager::go().