SequenceProfileConstraint.cc File Reference

This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored. More...

#include <core/scoring/constraints/SequenceProfileConstraint.hh>
#include <core/scoring/constraints/SequenceProfileConstraintCreator.hh>
#include <core/conformation/Residue.hh>
#include <core/sequence/SequenceProfile.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreType.hh>
#include <basic/Tracer.hh>
#include <utility>
#include <utility/file/file_sys_util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/id/SequenceMapping.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/func/XYZ_Func.hh>
#include <utility/vector1.hh>
#include <boost/lexical_cast.hpp>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::constraints

Functions
static basic::Tracer	core::scoring::constraints::TR ("core.scoring.constraints.SequenceProfileConstraint")

Detailed Description

This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.

Author

ashworth