Directory dependency graph for constraints:
Files | |
| file | AmbiguousConstraint.cc |
| contains declarations for a type of constraint that holds a number of constraints | |
| file | AmbiguousConstraint.fwd.hh |
| file | AmbiguousConstraint.hh |
| contains declarations for a type of constraint that holds multiple other | |
| file | AmbiguousNMRConstraint.cc |
| contains declarations for a type of constraint that holds a number of constraints | |
| file | AmbiguousNMRConstraint.fwd.hh |
| file | AmbiguousNMRConstraint.hh |
| contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once | |
| file | AmbiguousNMRDistanceConstraint.cc |
| file | AmbiguousNMRDistanceConstraint.fwd.hh |
| file | AmbiguousNMRDistanceConstraint.hh |
| file | AngleConstraint.cc |
| Definition of AngularConstraints. | |
| file | AngleConstraint.fwd.hh |
| file | AngleConstraint.hh |
| file | AtomPairConstraint.cc |
| file | AtomPairConstraint.fwd.hh |
| file | AtomPairConstraint.hh |
| file | AtomToAxisConstraint.cc |
| file | AtomToAxisConstraint.fwd.hh |
| file | AtomToAxisConstraint.hh |
| file | BackboneStubConstraint.cc |
| file | BackboneStubConstraint.fwd.hh |
| file | BackboneStubConstraint.hh |
| file | BackboneStubLinearConstraint.cc |
| file | BackboneStubLinearConstraint.fwd.hh |
| file | BackboneStubLinearConstraint.hh |
| file | BasePairConstraint.cc |
| A wrapper for a very particular AmbiguousConstraint of MultiConstraints. | |
| file | BasePairConstraint.fwd.hh |
| A wrapper for a very particular AmbiguousConstraint of MultiConstraints. | |
| file | BasePairConstraint.hh |
| A wrapper for a very particular AmbiguousConstraint of MultiConstraints. | |
| file | BasicConstraintCreators.cc |
| file | BasicConstraintCreators.hh |
| file | BigBinConstraint.cc |
| file | BigBinConstraint.hh |
| file | BoundConstraint.cc |
| file | BoundConstraint.fwd.hh |
| file | BoundConstraint.hh |
| file | ConstantConstraint.cc |
| file | ConstantConstraint.fwd.hh |
| file | ConstantConstraint.hh |
| file | Constraint.cc |
| file | Constraint.fwd.hh |
| file | Constraint.hh |
| Base class definition for Constraint class hierarchy. | |
| file | ConstraintCreator.cc |
| file | ConstraintCreator.fwd.hh |
| file | ConstraintCreator.hh |
| Base class for ConstraintCreators for the Constraint load-time factory registration scheme. | |
| file | ConstraintEnergyContainer.cc |
| file | ConstraintEnergyContainer.fwd.hh |
| file | ConstraintEnergyContainer.hh |
| file | ConstraintFactory.cc |
| Factory for creating various types of constraints. | |
| file | ConstraintFactory.fwd.hh |
| ConstraintFactory forward declaration. | |
| file | ConstraintFactory.hh |
| Factory for creating various types of constraints. | |
| file | ConstraintGraph.cc |
| file | ConstraintGraph.fwd.hh |
| Constraints Energy Graph class forward declaration. | |
| file | ConstraintGraph.hh |
| file | ConstraintIO.cc |
| file | ConstraintIO.hh |
| file | Constraints.cc |
| file | Constraints.fwd.hh |
| file | Constraints.hh |
| file | ConstraintsEnergy.cc |
| file | ConstraintsEnergy.fwd.hh |
| Constraints Energy Method forward declaration. | |
| file | ConstraintsEnergy.hh |
| Constraints Energy Method declaration. | |
| file | ConstraintsEnergyCreator.hh |
| Declaration for the class that connects ConstraintsEnergy with the ScoringManager. | |
| file | ConstraintSet.cc |
| file | ConstraintSet.fwd.hh |
| file | ConstraintSet.hh |
| file | CoordinateConstraint.cc |
| file | CoordinateConstraint.hh |
| file | CstMinimizationData.cc |
| A cacheable data wrapper for ConstraintsOPs for use in minimization. | |
| file | CstMinimizationData.hh |
| A cacheable data wrapper for ConstraintsOPs for use in minimization. | |
| file | DihedralConstraint.cc |
| file | DihedralConstraint.fwd.hh |
| file | DihedralConstraint.hh |
| file | DihedralPairConstraint.cc |
| file | DihedralPairConstraint.hh |
| file | DistancePairConstraint.cc |
| file | DistancePairConstraint.hh |
| file | DOF_Constraint.cc |
| file | DOF_Constraint.fwd.hh |
| file | DOF_Constraint.hh |
| file | FabConstraint.cc |
| This class is specific to antibodies and penalizes presence of non-cdr residues. | |
| file | FabConstraint.fwd.hh |
| This class is specific to antibodies and penalizes presence of residues flanking. | |
| file | FabConstraint.hh |
| This class is specific to antibodies and penalizes presence of residues flanking antibody cdr residues at Antigen-Antibody interfaces (ported from Fab constraint in rosetta++ which uses a constant constraint score of 0.5/flanking residue) | |
| file | KofNConstraint.cc |
| meta constraint where N constraints declared | |
| file | KofNConstraint.fwd.hh |
| meta constraint where N constraints declared | |
| file | KofNConstraint.hh |
| meta constraint where N constraints declared | |
| file | LocalCoordinateConstraint.cc |
| file | LocalCoordinateConstraint.hh |
| file | MembraneSpanConstraint.cc |
| constarint the TM spans specified by user to stay in the membrane | |
| file | MembraneSpanConstraint.fwd.hh |
| file | MembraneSpanConstraint.hh |
| file | MembraneSpanTermZConstraint.cc |
| constraint the Z axis distance between TM span edges | |
| file | MembraneSpanTermZConstraint.fwd.hh |
| file | MembraneSpanTermZConstraint.hh |
| file | MultiConstraint.cc |
| contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once | |
| file | MultiConstraint.fwd.hh |
| file | MultiConstraint.hh |
| contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once | |
| file | NamedAngleConstraint.cc |
| Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change. | |
| file | NamedAngleConstraint.fwd.hh |
| Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change. | |
| file | NamedAngleConstraint.hh |
| file | NamedAtomPairConstraint.cc |
| file | NamedAtomPairConstraint.fwd.hh |
| file | NamedAtomPairConstraint.hh |
| file | NamedDihedralConstraint.cc |
| Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change. | |
| file | NamedDihedralConstraint.fwd.hh |
| Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change. | |
| file | NamedDihedralConstraint.hh |
| file | NonResidueTypeConstraint.cc |
| file | NonResidueTypeConstraint.fwd.hh |
| file | NonResidueTypeConstraint.hh |
| file | ResidueCouplingConstraint.cc |
| file | ResidueCouplingConstraint.fwd.hh |
| constrainting two residues to be the same type, based on | |
| file | ResidueCouplingConstraint.hh |
| file | ResidueTypeConstraint.cc |
| file | ResidueTypeConstraint.fwd.hh |
| file | ResidueTypeConstraint.hh |
| file | ResidueTypeLinkingConstraint.cc |
| Implements linked constraints, where bonuses or penalties can be applied if pairs of residues match specific sequences. | |
| file | ResidueTypeLinkingConstraint.fwd.hh |
| constrainting two residues to be the same type, based on | |
| file | ResidueTypeLinkingConstraint.hh |
| Implements linked constraints, where bonuses or penalties can be applied if pairs of residues match specific sequences. | |
| file | RTConstraint.cc |
| file | RTConstraint.fwd.hh |
| file | RTConstraint.hh |
| Constraint definition for RT of stub pairs. | |
| file | SequenceProfileConstraint.cc |
| This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored. | |
| file | SequenceProfileConstraint.fwd.hh |
| file | SequenceProfileConstraint.hh |
| This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). | |
| file | SequenceProfileConstraintCreator.hh |
| file | SiteConstraint.cc |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | SiteConstraint.fwd.hh |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | SiteConstraint.hh |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | SiteConstraintResidues.cc |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | SiteConstraintResidues.fwd.hh |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | SiteConstraintResidues.hh |
| This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints. | |
| file | util.cc |
| utility functions for defining and using constraints. | |
| file | util.hh |
| Utility functions for defining and using constraints. | |
