#include <string>
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

	protocols::evolution

	protocols::evolution::AlignmentCleanerTools

Functions
void	protocols::evolution::AlignmentCleanerTools::thread_sequence_on_pose (core::pose::Pose &pose, std::string const &thread_seq, core::scoring::ScoreFunctionOP scorefxn)

std::tuple< std::string, std::string >	protocols::evolution::AlignmentCleanerTools::indel_motif (std::string const &aln_seq, core::Size const motif_radius, core::Size const aln_resi, std::string const &pose_ss_aln)

core::Real	protocols::evolution::AlignmentCleanerTools::indel_motif_seq_id (std::string const &motif1, std::string const &motif2)

std::string	protocols::evolution::AlignmentCleanerTools::short_ss_loop_filter (std::string ss, core::Size min_loop_length)

Detailed Description

Namespaces