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Rosetta
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Utility functions for Pose Sewing. More...
#include <protocols/pose_sewing/strong_types.hh>#include <protocols/sewing/scoring/MotifScorer.fwd.hh>#include <core/types.hh>#include <core/pose/Pose.fwd.hh>#include <core/scoring/ScoreFunction.fwd.hh>#include <core/select/residue_selector/ResidueSelector.fwd.hh>#include <core/conformation/Residue.fwd.hh>#include <numeric/xyzVector.hh>#include <numeric/HomogeneousTransform.hh>#include <core/conformation/Residue.hh>#include <map>#include <set>Namespaces | |
| protocols | |
| The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
| protocols::pose_sewing | |
Functions | |
| void | protocols::pose_sewing::identify_ss_blocks (std::set< core::select::residue_selector::ResidueSubset > &outset, utility::vector1< bool > const &subset) |
| Get residues in each block through a set of equal subsets. Number of subsets are the number of SS blocks. More... | |
| void | protocols::pose_sewing::identify_ss_blocks_vec (utility::vector1< core::select::residue_selector::ResidueSubset > &out_vec, utility::vector1< bool > const &subset) |
| Will eventually replace standard function. More... | |
| void | protocols::pose_sewing::calculate_blocks (std::map< core::Size, core::Size > &outmap, core::pose::Pose const &pose) |
| Assign E/H blocks in the given pose. More... | |
| void | protocols::pose_sewing::calculate_blocks_from_subset (std::map< core::Size, core::Size > &outmap, utility::vector1< bool > const &subset) |
| Assign arbitrary blocks from a Residue subset. More... | |
| void | protocols::pose_sewing::calculate_helices (std::map< core::Size, core::Size > &outmap, core::pose::Pose const &pose, core::Size min_length) |
| bool | protocols::pose_sewing::all_L_dssp (core::pose::Pose const &pose) |
| Is the DSSP all loop? A pose unfortunately starts with all L as the DSSP when creating a pose from seq and inserting residues as is done for segments. More... | |
| core::Real | protocols::pose_sewing::calculate_motif_score_bt_residues (sewing::scoring::MotifScorer const &scorer, core::conformation::Residue const &res1, core::conformation::Residue const &res2, char res1_SS, char res2_SS) |
| Calculate the motif score between two residues. More... | |
| core::Real | protocols::pose_sewing::calculate_distance_score_bt_residues (core::conformation::Residue const &N_res, core::conformation::Residue const &C_res, core::Real min_score, core::Real min_distance, core::Real dist_mult) |
| void | protocols::pose_sewing::calculate_bw_pose_compat_motifs (std::map< std::string, core::Real > &outmap, core::pose::Pose const &pose, std::set< core::select::residue_selector::ResidueSubset > const &block_selections, bool drop_best=true, bool normalize_by_residues=false, core::Real max_pair_score=0, bool use_motifs=true) |
| Core code to calculate BlockWise/Elementwise Pose Compatable Motif Metrics. Reports worst score found for each block (Number as a string for the metric) If max_pair_score is something not 0, will use it (essentially used for filtering outside of metrics). More... | |
| void | protocols::pose_sewing::calculate_bw_window_motifs (std::map< std::string, core::Real > &outmap, core::pose::Pose const &pose, std::set< core::select::residue_selector::ResidueSubset > const &block_selections, core::Size window_width=3, bool use_motifs=true) |
| Core code to calculate window metrics. Returns worst score for each window, represented as a string for the metric. More... | |
Utility functions for Pose Sewing.
1.9.1