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Rosetta
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Header file for KinematicPerturbers used by the kineamtic mover. More...
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.fwd.hh>#include <protocols/loops/loop_closure/kinematic_closure/KinematicPerturber.fwd.hh>#include <core/types.hh>#include <core/chemical/AA.hh>#include <core/conformation/ppo_torsion_bin.fwd.hh>#include <core/pose/Pose.fwd.hh>#include <core/scoring/Ramachandran.fwd.hh>#include <core/scoring/Ramachandran2B.fwd.hh>#include <core/kinematics/MoveMap.fwd.hh>#include <utility/LexicographicalIterator.hh>#include <utility/vector1.hh>#include <utility/VirtualBase.hh>#include <string>#include <map>Classes | |
| class | protocols::loops::loop_closure::kinematic_closure::KinematicPerturber |
| pure virtual base class for KinematicPerturber. KinematicPerturbers determine HOW loops should be perturbed. The base class contains a provision for determining WHERE they should be perturbed: MoveMap sensitivity. More... | |
| class | protocols::loops::loop_closure::kinematic_closure::TorsionSamplingKinematicPerturber |
| torsion sampling kinematic perturber More... | |
| class | protocols::loops::loop_closure::kinematic_closure::VicinitySamplingKinematicPerturber |
| vicinity sampling kinematic perturber More... | |
| class | protocols::loops::loop_closure::kinematic_closure::TorsionSweepingKinematicPerturber |
| WARNING WARNING UNTESTED!!!! torsion sweeping kinematic perturber. More... | |
| class | protocols::loops::loop_closure::kinematic_closure::NeighborDependentTorsionSamplingKinematicPerturber |
| neighbor-dependent torsion sampling kinematic perturber – uses rama2b for phi/psi lookup More... | |
| class | protocols::loops::loop_closure::kinematic_closure::TorsionRestrictedKinematicPerturber |
| torsion-restricted kinematic perturber (still samples randomly, but only within a given torsion bin) More... | |
| class | protocols::loops::loop_closure::kinematic_closure::BaseTabooPerturber |
| Taboo-sampling perturber base class, the two variants of which, share much code in common, but interface with separate Ramachandran potentials. More... | |
| class | protocols::loops::loop_closure::kinematic_closure::TabooSamplingKinematicPerturber |
| Taboo-sampling kinematic perturber (still samples randomly, but only within a specific torsion bin, and the Taboo sampler ensures that this torsion bin is varied in each iteration) More... | |
| class | protocols::loops::loop_closure::kinematic_closure::NeighborDependentTabooSamplingKinematicPerturber |
| Neighbor-dependent Taboo-sampling kinematic perturber (still samples randomly, but only within a given torsion bin; the Taboo sampler ensures that this torsion bin is varied in each iteration) that uses neighbor-dependent Ramachandran distributions (rama2b) More... | |
Namespaces | |
| protocols | |
| The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
| protocols::loops | |
| protocols::loops::loop_closure | |
| protocols::loops::loop_closure::kinematic_closure | |
Header file for KinematicPerturbers used by the kineamtic mover.
1.9.1