ThreadingJobInputter.cc File Reference

#include <protocols/comparative_modeling/ThreadingJobInputter.hh>
#include <protocols/comparative_modeling/ThreadingJobInputterCreator.hh>
#include <protocols/comparative_modeling/ThreadingJob.hh>
#include <protocols/jd2/Job.hh>
#include <string>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/nonlocal.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <utility/file/FileName.hh>
#include <utility/io/izstream.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentFileOptions.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/util.hh>
#include <protocols/comparative_modeling/ThreadingMover.hh>
#include <protocols/comparative_modeling/ExtraThreadingMover.hh>
#include <protocols/jd2/JobsContainer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::comparative_modeling

Functions
static basic::Tracer	protocols::comparative_modeling::tr ("protocols.comparative_modeling.ThreadingJobInputter")
std::map< std::string, utility::vector1< core::Size > >	protocols::comparative_modeling::read_extra_residues (utility::vector1< std::string > const &fns)