modeling_util.hh File Reference

#include <protocols/tcr/TCRseqInfo.hh>
#include <core/pose/Pose.fwd.hh>
#include <protocols/loops/Loops.fwd.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::tcr

Functions
void	protocols::tcr::orient_tcr_chain (core::pose::Pose &fr_piece, core::pose::Pose const &ori_tmplt_chain, TCRseqInfo::tcrposi const &selepos)
	orient TCR alpha/beta chains based on the orientation templates More...
void	protocols::tcr::match_template_and_target_sequence (core::pose::Pose const &scafold, std::string const &targetseq, core::pose::Pose &posecopy)
	match template seq with target seq during modeling More...
void	protocols::tcr::ind_remodel_tcr_cdr_loops (core::pose::Pose &tcr_pose, core::Size const loopstart, core::Size const loopend)
	loop rebuild function More...
void	protocols::tcr::refine_all_cdr_loops (core::pose::Pose &tcr_pose, TCRseqInfo::tcrposi const &a_posi, TCRseqInfo::tcrposi const &b_posi)
	refine all cdr loops More...
void	protocols::tcr::remodel_tcr_cdr_loops (core::pose::Pose &tcr_pose, protocols::loops::LoopsOP const &cdr3loops, bool refine)
	loop remodel function for CDR loop More...
void	protocols::tcr::refine_tcr_cdr_loops (core::pose::Pose &tcr_pose, protocols::loops::LoopsOP const &cdrloops)
	loop refine function for CDR loop More...
void	protocols::tcr::refine_cdr3_loops (core::pose::Pose &tcr_pose, antibody::grafting::CDR_Bounds const &acdr3, antibody::grafting::CDR_Bounds const &bcdr3)
	loop refine function for CDR3 alpha and CDR3 beta loops More...
void	protocols::tcr::refine_cdr_loop (core::pose::Pose &tcr_pose, antibody::grafting::CDR_Bounds const &cdr)
	loop refine function for CDR alpha/beta loop More...