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| core::Size | protocols::splice::nearest_to_entry_stop_on_pose (core::pose::Pose const &pose, core::pose::Pose const &template_pose, core::Size residue, std::string tail_segment, std::string protein_family, core::Size chain, std::string segment) |
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| void | protocols::splice::modify_dbase_with_compatible_backbones (utility::vector1< ResidueBBDofs > torsion_database, utility::vector1< core::Size > &dbase, utility::vector1< std::string > intersect_pdbs) |
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| void | protocols::splice::load_pdb_segments_from_pose_comments (core::pose::Pose const &pose, std::map< std::string, std::string > &pdb_segments) |
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| core::Size | protocols::splice::report_coordinate_constraints (core::pose::Pose const &pose) |
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| bool | protocols::splice::calculate_rmsd (core::pose::Pose &pose, core::pose::Pose const &source_pose, core::Size total_residue_new, core::Size nearest_to_from, core::Size from_res, core::Real rms_A, core::Real rms_B) |
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| void | protocols::splice::min_seg (core::pose::Pose &pose, ResidueBBDofs dofs, bool debug, core::Size from_res, std::string tail_segment, core::Size cut_site, core::Size cut_vl_vh_after_llc, ResidueBBDofs tail_dofs, core::scoring::ScoreFunctionOP scorefxn, std::string segment_type) |
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| utility::vector1< numeric::xyzVector< core::Real > > | protocols::splice::coords (core::pose::Pose const &pose, utility::vector1< core::Size > const positions) |
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| utility::vector1< core::Size > | protocols::splice::find_residues_on_chain1_inside_interface (core::pose::Pose const &pose, core::Size chainNum) |
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| std::string | protocols::splice::parse_pdb_code (std::string pdb_file_name) |
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| void | protocols::splice::report_designable_packable_residues (core::pack::task::TaskFactoryOP const tf, core::pose::Pose pose) |
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| void | protocols::splice::fix_chain_break_residue (core::pose::Pose &pose, SpliceManager splicemanager) |
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| void | protocols::splice::report_des_pack_res (core::pose::Pose const &pose, core::pack::task::TaskFactoryOP tf) |
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