GreenPacker.hh File Reference

packing mover that makes extensive reuse of rotamer pair energies class declaration More...

#include <protocols/minimization_packing/GreenPacker.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <utility/graph/Graph.fwd.hh>
#include <core/pack/interaction_graph/PrecomputedPairEnergiesInteractionGraph.fwd.hh>
#include <core/pack/task/TaskFactory.fwd.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/scoring/EnergyMap.fwd.hh>
#include <core/scoring/methods/LongRangeTwoBodyEnergy.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <core/types.hh>
#include <utility/vector1.hh>
#include <utility/VirtualBase.hh>
#include <core/scoring/annealing/RotamerSets.fwd.hh>

Classes
class	protocols::minimization_packing::MinimalRotamer
class	protocols::minimization_packing::GroupDiscriminator
	Interface class used to break a pose down into a set of component "groups" where intra-group rotamer-pair energies are preserved between calls to the GreenPacker. E.g. in rigid-body docking between two proteins, chains 1 and 2 define groups 1 and 2. In rigid-body docking between two domains of the same chain, those residues upstream of jump 1 define group 1, and those downstream of jump 1 define group 2. In loop modelling, the static background is group 1, and the loop itself is group 0, since loop residues will have their bb dofs change regularly between repackings. More...
class	protocols::minimization_packing::UserDefinedGroupDiscriminator
class	protocols::minimization_packing::ChainGroupDiscriminator
class	protocols::minimization_packing::GreenPacker

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::minimization_packing

Detailed Description

packing mover that makes extensive reuse of rotamer pair energies class declaration

Author

Andrew Leaver-Fay (aleav.nosp@m.erfa.nosp@m.y@gma.nosp@m.il.c.nosp@m.om)