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| core::Real | protocols::glycopeptide_docking::calculate_sampled_distance (core::pose::Pose const &pose, core::Size const glycosylation_residue, core::Size const donor_residue) |
| | Calculate distance between donor and substrate. More...
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| std::map< std::string, core::Real > | protocols::glycopeptide_docking::calculate_additional_glycosylation_metrics (core::pose::Pose const &pose, core::Size glycosylation_residue, core::Size const donor_residue) |
| | Calculate additional distance metrics for glycosylation. More...
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| void | protocols::glycopeptide_docking::write_debug_pdb (core::pose::Pose const &pose, core::Size const nstruct_max, core::Size const nstruct_index, std::string name) |
| | Write pdbs with output string with specified name and prefix, suffix and decoy number to match the fianl decoy. More...
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| void | protocols::glycopeptide_docking::glycosylate_residues (core::pose::Pose &pose, utility::vector1< core::Size > const &sugar_residues, utility::vector1< std::string > &sugar_names) |
| | Glycosylate residues (sugar_residues) with sugars specified in sugar_names. This feature is experimental. More...
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| void | protocols::glycopeptide_docking::setup_glycosylation_foldtree (core::pose::Pose &pose, protocols::glycopeptide_docking::GlycopeptideDockingFlagsOP flags, core::kinematics::FoldTreeOP ft_docking) |
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| void | protocols::glycopeptide_docking::record_pose_metrics (core::pose::Pose &pose, protocols::glycopeptide_docking::GlycopeptideDockingFlagsOP flags, utility::vector1< int > const jumps, core::pose::PoseOP ref_pose) |
| | Record metrics such as important distances, rmsds and interaction energies (to match publication) More...
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