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| core::Size | protocols::rosetta_scripts::find_nearest_res (core::pose::Pose const &source, core::pose::Pose const &target, core::Size const res, core::Size const chain) |
| | Return the number of the residue on source that is nearest to res on target. If the distance is greater than 2.0 returns 0 to indicate error. More...
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| void | protocols::rosetta_scripts::find_nearest_res (core::pose::Pose const &source, core::pose::Pose const &target, core::Size const res, core::Size &target_res, core::Real &dist, core::Size const chain=0) |
| | find nearest residue and also return the distance More...
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| core::Size | protocols::rosetta_scripts::find_nearest_disulfide (core::pose::Pose const &pose, core::Size const res) |
| | finds the nearest disulife to given residue on pose by searching both up and down stream to the given postion More...
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| utility::vector1< core::Size > | protocols::rosetta_scripts::residue_packer_states (core::pose::Pose const &pose, core::pack::task::TaskFactoryCOP tf, bool const designable, bool const packable) |
| | returns a vector containing all the residues with a given packer state according to the TF More...
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| void | protocols::rosetta_scripts::attributes_for_parse_residue_selector (utility::tag::AttributeList &attributes, std::string const &description) |
| | Appends the attributes read by parse_residue_selector. More...
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| core::select::movemap::MoveMapFactoryOP | protocols::rosetta_scripts::parse_movemap_factory_legacy (utility::tag::TagCOP in_tag, basic::datacache::DataMap &data, bool const reset_movemap=true, core::select::movemap::MoveMapFactoryOP mmf_to_modify=nullptr) |
| | Parse a MoveMap factory from tags using the old MoveMap specification syntax. More...
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| core::select::movemap::MoveMapFactoryOP | protocols::rosetta_scripts::parse_named_movemap_factory_legacy (utility::tag::TagCOP in_tag, std::string const &name, basic::datacache::DataMap &data, bool const reset_movemap=true, core::select::movemap::MoveMapFactoryOP mmf_to_modify=nullptr) |
| | Parse a MoveMap factory from tags using the old MoveMap specification syntax. Will look for a MoveMap entry with a particular name entry. More...
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| void | protocols::rosetta_scripts::append_subelement_for_parse_movemap_factory_legacy (utility::tag::XMLSchemaDefinition &xsd, utility::tag::XMLSchemaSimpleSubelementList &subelements, std::string const &description="") |
| | Adds a subelement to an input subelement list describing a MoveMap subtag that will be used by the parse_movemap_legacy function. More...
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| core::pose::PoseOP | protocols::rosetta_scripts::saved_reference_pose (utility::tag::TagCOP const in_tag, basic::datacache::DataMap &data_map, std::string const &tag_name) |
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| core::pose::PoseCOP | protocols::rosetta_scripts::legacy_saved_pose_or_input (utility::tag::TagCOP tag, basic::datacache::DataMap &data, std::string const &class_name, bool use_native=true, std::string const &refname="reference_name") |
| | Retrieve the reference pose. If not given, fall back to the native pose (if asked for), or the input pose as a last resort. Will print a warning message if the input pose is used. More...
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| void | protocols::rosetta_scripts::attributes_for_saved_reference_pose (utility::tag::AttributeList &attributes, std::string const &attribute_name="reference_name") |
| | convenience function to access pointers to poses that will be stored in the data map at an arbitrary point during an RS protocol Will look for tag in in_tag variable More...
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| void | protocols::rosetta_scripts::attributes_for_saved_reference_pose_w_description (utility::tag::AttributeList &attributes, std::string const &description, std::string const &attribute_name="reference_name") |
| | convenience function to access pointers to poses that will be stored in the data map at an arbitrary point during an RS protocol Will look for tag in in_tag variable More...
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| protocols::filters::FilterOP | protocols::rosetta_scripts::parse_filter (std::string const &filter_name, basic::datacache::DataMap const &d) |
| | Return the Filter with the given name. Raise a RosettaScriptsOptionError if not present. More...
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| protocols::filters::FilterOP | protocols::rosetta_scripts::parse_filter_or_null (std::string const &filter_name, basic::datacache::DataMap const &d) |
| | Return the Filter with the given name. Return nullptr if not present. More...
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| protocols::moves::MoverOP | protocols::rosetta_scripts::parse_mover (std::string const &mover_name, basic::datacache::DataMap const &d) |
| | Return the Mover with the given name. Raise a RosettaScriptsOptionError if not present. More...
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| protocols::moves::MoverOP | protocols::rosetta_scripts::parse_mover_or_null (std::string const &mover_name, basic::datacache::DataMap const &d) |
| | Return the Mover with the given name. Return nullptr if not present. More...
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| numeric::xyzVector< core::Real > | protocols::rosetta_scripts::parse_xyz_vector (utility::tag::TagCOP const xyz_vector_tag) |
| | utility function for parsing xyzVector More...
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| void | protocols::rosetta_scripts::attributes_for_parse_xyz_vector (utility::tag::AttributeList &attlist) |
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| utility::sql_database::sessionOP | protocols::rosetta_scripts::parse_database_session (utility::tag::TagCOP tag, basic::datacache::DataMap const &datamap) |
| | This is kind of a strange place for this, but for library-level reasons it needs to be more accessible than a more logical home with ReportToDB, and cannot live in basic because it needs other functions in this file. (There is also value in not creating a new file b/c it breaks the fast-compile system XML XSD XRW is using, and it's 6pm on Friday!) More...
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| void | protocols::rosetta_scripts::attributes_for_parse_database_session (utility::tag::XMLSchemaDefinition &xsd, utility::tag::AttributeList &attlist) |
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| void | protocols::rosetta_scripts::print_template_script () |
| | Prints out an empty template RosettaScript to the tracer. More...
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| bool | protocols::rosetta_scripts::print_information (std::string const &component_name, std::stringstream &outstream) |
| | Prints out XSD information about the XML-accessible options for a given RosettaScipts-accessible mover, filter, task operation, residue selector, simple_metric, or packer palette. More...
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| void | protocols::rosetta_scripts::print_information (utility::vector1< std::string > const &component_names) |
| | Prints out XSD information about the XML-accessible options for a given set of RosettaScipts-accessible movers, filters, task operations, residue selectors, simple metric, constraint generators, or packer palette. More...
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| void | protocols::rosetta_scripts::save_schema (std::string const &filename) |
| | Saves the XSD to the given file. More...
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