protocols::calc_taskop_movers Namespace Reference

Classes
class	ConsensusDesignMover
	This mover will modify a given task according to a sequence profile and then call the PackRotamersMover. At every position that is designable in the task, AAs that have a probability > min_aa_probability_ and higher than the native in the sequence profile will be allowed. More...
class	ConsensusDesignMoverCreator
class	CreateSequenceMotifMover
	Simple mover to Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif. More...
class	CreateSequenceMotifMoverCreator
class	DesignRepackMover
	a pure virtual base class for movers which redesign and repack the interface More...
class	ForceDisulfidesMover
	simple mover that fixes disulfides according to a defined list and then simultaneously repacks within 6A shells around each affected cystein residue. More...
class	ForceDisulfidesMoverCreator

Typedefs
typedef utility::pointer::shared_ptr< ConsensusDesignMover >	ConsensusDesignMoverOP
typedef utility::pointer::shared_ptr< CreateSequenceMotifMover >	CreateSequenceMotifMoverOP
typedef utility::pointer::shared_ptr< CreateSequenceMotifMover const >	CreateSequenceMotifMoverCOP
typedef utility::pointer::shared_ptr< DesignRepackMover >	DesignRepackMoverOP
typedef utility::pointer::shared_ptr< DesignRepackMover const >	DesignRepackMoverCOP
typedef utility::pointer::shared_ptr< ForceDisulfidesMover >	ForceDisulfideMoverOP
typedef utility::pointer::shared_ptr< ForceDisulfidesMover const >	ForceDisulfideMoverCOP

Functions
std::ostream &	operator<< (std::ostream &os, CreateSequenceMotifMover const &mover)
	private methods /// More...
static basic::Tracer	TR ("protocols.simple_moves.ForceDisulfidesMover")

Typedef Documentation

ConsensusDesignMoverOP

typedef utility::pointer::shared_ptr< ConsensusDesignMover > protocols::calc_taskop_movers::ConsensusDesignMoverOP

CreateSequenceMotifMoverCOP

typedef utility::pointer::shared_ptr< CreateSequenceMotifMover const > protocols::calc_taskop_movers::CreateSequenceMotifMoverCOP

CreateSequenceMotifMoverOP

typedef utility::pointer::shared_ptr< CreateSequenceMotifMover > protocols::calc_taskop_movers::CreateSequenceMotifMoverOP

DesignRepackMoverCOP

typedef utility::pointer::shared_ptr< DesignRepackMover const > protocols::calc_taskop_movers::DesignRepackMoverCOP

DesignRepackMoverOP

typedef utility::pointer::shared_ptr< DesignRepackMover > protocols::calc_taskop_movers::DesignRepackMoverOP

ForceDisulfideMoverCOP

typedef utility::pointer::shared_ptr< ForceDisulfidesMover const > protocols::calc_taskop_movers::ForceDisulfideMoverCOP

ForceDisulfideMoverOP

typedef utility::pointer::shared_ptr< ForceDisulfidesMover > protocols::calc_taskop_movers::ForceDisulfideMoverOP

Function Documentation

operator<<()

std::ostream & protocols::calc_taskop_movers::operator<<	(	std::ostream &	os,
		CreateSequenceMotifMover const &	mover
	)

private methods ///

References protocols::calc_taskop_movers::CreateSequenceMotifMover::show().

TR()

static basic::Tracer protocols::calc_taskop_movers::TR ( "protocols.simple_moves.ForceDisulfidesMover"  )

static

Referenced by protocols::calc_taskop_movers::CreateSequenceMotifMover::apply(), protocols::calc_taskop_movers::ForceDisulfidesMover::apply(), protocols::calc_taskop_movers::ConsensusDesignMover::create_consensus_design_task(), protocols::calc_taskop_movers::CreateSequenceMotifMover::initialize_objects(), protocols::calc_taskop_movers::ForceDisulfidesMover::parse_my_tag(), protocols::calc_taskop_movers::DesignRepackMover::parse_my_tag(), and protocols::calc_taskop_movers::DesignRepackMover::target_residues().