protocols::sewing::hashing Namespace Reference

Classes
struct	AlignmentFGMSettings
class	AlignmentFileGeneratorMover
	Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. More...
class	AlignmentFileGeneratorMoverCreator
class	AlignmentGenerator
	This class contains the infrastructure for parsing an edge file and for generating all possible alignments for a given edge. More...
class	BasisMapGenerator
	Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. More...
class	EdgeMapGenerator
	Class used to generate and load in edge files for use with SEWING protocols. More...
class	Hasher
	A geometric hashing class used by the SEWING protocol. More...
struct	coord_hash
struct	coord_equal_to
struct	HashValue
struct	HasherSettings
class	SegmentVector
struct	AlignmentSettings
struct	IdealContact
struct	LigandCoordInfo
class	LigandBindingResPlacer
class	ModelFileReader
	a reader of SEWING model files More...

Typedefs
typedef utility::pointer::shared_ptr< AlignmentFileGeneratorMover >	AlignmentFileGeneratorMoverOP
typedef utility::pointer::shared_ptr< AlignmentFileGeneratorMover const >	AlignmentFileGeneratorMoverCOP
using	AlignmentFGMSettingsOP = utility::pointer::shared_ptr< AlignmentFGMSettings >
typedef utility::pointer::shared_ptr< AlignmentGenerator >	AlignmentGeneratorOP
typedef utility::pointer::shared_ptr< AlignmentGenerator const >	AlignmentGeneratorCOP
typedef utility::pointer::shared_ptr< BasisMapGenerator >	BasisMapGeneratorOP
typedef utility::pointer::shared_ptr< BasisMapGenerator const >	BasisMapGeneratorCOP
typedef utility::pointer::shared_ptr< EdgeMapGenerator >	EdgeMapGeneratorOP
typedef utility::pointer::shared_ptr< EdgeMapGenerator const >	EdgeMapGeneratorCOP
typedef utility::pointer::shared_ptr< Hasher >	HasherOP
typedef utility::pointer::shared_ptr< Hasher const >	HasherCOP
typedef utility::fixedsizearray1< int, 3 >	HashKey
typedef boost::unordered_map< HashKey, HashValue, coord_hash, coord_equal_to >	HashMap
typedef std::map< core::id::AtomID, core::id::AtomID >	AtomMap
typedef utility::pointer::shared_ptr< SegmentVector >	SegmentVectorOP
typedef utility::pointer::shared_ptr< SegmentVector const >	SegmentVectorCOP
typedef std::map< core::Size, std::set< core::Size > >	EdgeMap
typedef utility::pointer::shared_ptr< EdgeMap >	EdgeMapOP
typedef std::map< core::Size, std::map< core::Size, utility::vector1< std::pair< core::Size, core::Size > > > >	BasisMap
typedef utility::pointer::shared_ptr< BasisMap >	BasisMapOP
typedef utility::pointer::shared_ptr< LigandBindingResPlacer >	LigandBindingResPlacerOP
typedef utility::pointer::shared_ptr< LigandBindingResPlacer const >	LigandBindingResPlacerCOP
typedef boost::unordered_map< HashKey, std::set< LigandCoordInfo >, coord_hash, coord_equal_to >	LigandHashMap
typedef utility::pointer::shared_ptr< ModelFileReader >	ModelFileReaderOP
typedef utility::pointer::shared_ptr< ModelFileReader const >	ModelFileReaderCOP

Functions
std::ostream &	operator<< (std::ostream &os, AlignmentFileGeneratorMover const &mover)

Typedef Documentation

AlignmentFGMSettingsOP

using protocols::sewing::hashing::AlignmentFGMSettingsOP = typedef utility::pointer::shared_ptr< AlignmentFGMSettings >

AlignmentFileGeneratorMoverCOP

typedef utility::pointer::shared_ptr< AlignmentFileGeneratorMover const > protocols::sewing::hashing::AlignmentFileGeneratorMoverCOP

AlignmentFileGeneratorMoverOP

typedef utility::pointer::shared_ptr< AlignmentFileGeneratorMover > protocols::sewing::hashing::AlignmentFileGeneratorMoverOP

AlignmentGeneratorCOP

typedef utility::pointer::shared_ptr< AlignmentGenerator const > protocols::sewing::hashing::AlignmentGeneratorCOP

AlignmentGeneratorOP

typedef utility::pointer::shared_ptr< AlignmentGenerator > protocols::sewing::hashing::AlignmentGeneratorOP

AtomMap

typedef std::map< core::id::AtomID, core::id::AtomID > protocols::sewing::hashing::AtomMap

BasisMap

typedef std::map< core::Size, std::map < core::Size, utility::vector1< std::pair< core::Size, core::Size > > > > protocols::sewing::hashing::BasisMap

BasisMapGeneratorCOP

typedef utility::pointer::shared_ptr< BasisMapGenerator const > protocols::sewing::hashing::BasisMapGeneratorCOP

BasisMapGeneratorOP

typedef utility::pointer::shared_ptr< BasisMapGenerator > protocols::sewing::hashing::BasisMapGeneratorOP

BasisMapOP

typedef utility::pointer::shared_ptr< BasisMap > protocols::sewing::hashing::BasisMapOP

EdgeMap

typedef std::map< core::Size, std::set< core::Size > > protocols::sewing::hashing::EdgeMap

EdgeMapGeneratorCOP

typedef utility::pointer::shared_ptr< EdgeMapGenerator const > protocols::sewing::hashing::EdgeMapGeneratorCOP

EdgeMapGeneratorOP

typedef utility::pointer::shared_ptr< EdgeMapGenerator > protocols::sewing::hashing::EdgeMapGeneratorOP

EdgeMapOP

typedef utility::pointer::shared_ptr< EdgeMap > protocols::sewing::hashing::EdgeMapOP

HasherCOP

typedef utility::pointer::shared_ptr< Hasher const > protocols::sewing::hashing::HasherCOP

HasherOP

typedef utility::pointer::shared_ptr< Hasher > protocols::sewing::hashing::HasherOP

HashKey

typedef utility::fixedsizearray1<int, 3> protocols::sewing::hashing::HashKey

HashMap

typedef boost::unordered_map<HashKey,HashValue,coord_hash,coord_equal_to> protocols::sewing::hashing::HashMap

LigandBindingResPlacerCOP

typedef utility::pointer::shared_ptr< LigandBindingResPlacer const > protocols::sewing::hashing::LigandBindingResPlacerCOP

LigandBindingResPlacerOP

typedef utility::pointer::shared_ptr< LigandBindingResPlacer > protocols::sewing::hashing::LigandBindingResPlacerOP

LigandHashMap

typedef boost::unordered_map< HashKey, std::set< LigandCoordInfo >, coord_hash, coord_equal_to > protocols::sewing::hashing::LigandHashMap

ModelFileReaderCOP

typedef utility::pointer::shared_ptr< ModelFileReader const > protocols::sewing::hashing::ModelFileReaderCOP

ModelFileReaderOP

typedef utility::pointer::shared_ptr< ModelFileReader > protocols::sewing::hashing::ModelFileReaderOP

SegmentVectorCOP

typedef utility::pointer::shared_ptr< SegmentVector const > protocols::sewing::hashing::SegmentVectorCOP

SegmentVectorOP

typedef utility::pointer::shared_ptr< SegmentVector > protocols::sewing::hashing::SegmentVectorOP

Function Documentation

operator<<()

std::ostream & protocols::sewing::hashing::operator<<	(	std::ostream &	os,
		AlignmentFileGeneratorMover const &	mover
	)

References protocols::sewing::hashing::AlignmentFileGeneratorMover::show().