protocols::antibody::grafting Namespace Reference

Classes
class	Grafting_Base_Exception
class	_AE_grafting_failed_
class	_AE_cdr_detection_failed_
class	_AE_json_cdr_detection_failed_
class	_AE_cdr_undefined_
class	_AE_invalid_cdr_region_
class	_AE_numbering_failed_
class	_AE_unexpected_region_length_
class	_AE_scs_failed_

Typedefs
typedef utility::pointer::shared_ptr< SCS_Result >	SCS_ResultOP
typedef utility::pointer::shared_ptr< SCS_Result const >	SCS_ResultCOP
typedef utility::pointer::shared_ptr< SCS_Antibody_Database_Result >	SCS_Antibody_Database_ResultOP
typedef utility::pointer::shared_ptr< SCS_Antibody_Database_Result const >	SCS_Antibody_Database_ResultCOP
typedef utility::pointer::shared_ptr< SCS_BlastResult >	SCS_BlastResultOP
typedef utility::pointer::shared_ptr< SCS_BlastResult const >	SCS_BlastResultCOP
typedef utility::pointer::shared_ptr< SCS_Results >	SCS_ResultsOP
typedef utility::pointer::shared_ptr< SCS_Results const >	SCS_ResultsCOP
typedef utility::pointer::shared_ptr< SCS_ResultSet >	SCS_ResultSetOP
typedef utility::pointer::shared_ptr< SCS_ResultSet const >	SCS_ResultSetCOP
typedef utility::pointer::shared_ptr< SCS_Base >	SCS_BaseOP
typedef utility::pointer::shared_ptr< SCS_Base const >	SCS_BaseCOP
typedef utility::pointer::shared_ptr< SCS_LoopOverSCs >	SCS_LoopOverSCsOP
typedef utility::pointer::shared_ptr< SCS_LoopOverSCs const >	SCS_LoopOverSCsCOP
typedef utility::pointer::shared_ptr< SCS_BlastPlus >	SCS_BlastPlusOP
typedef utility::pointer::shared_ptr< SCS_BlastPlus const >	SCS_BlastPlusCOP
typedef utility::pointer::shared_ptr< SCS_Functor >	SCS_FunctorOP
typedef utility::pointer::shared_ptr< SCS_Functor const >	SCS_FunctorCOP
typedef utility::pointer::shared_ptr< SCS_SubstitutionMatrixResult >	SCS_SubstitutionMatrixResultOP
typedef utility::pointer::shared_ptr< SCS_SubstitutionMatrixResult const >	SCS_SubstitutionMatrixResultCOP

Functions
bool	antibody_grafting_usable ()
	Check if regex library is functional. More...
utility::vector0< std::map< std::string, std::string > >	parse_plain_text_with_columns (std::string file_name, std::string legend_prefix="# ", char legend_separator=' ', std::string data_prefix="", char data_separator=' ')
	helper function to parse plain text for BLAST result and filter data More...

Typedef Documentation

SCS_Antibody_Database_ResultCOP

typedef utility::pointer::shared_ptr< SCS_Antibody_Database_Result const > protocols::antibody::grafting::SCS_Antibody_Database_ResultCOP

SCS_Antibody_Database_ResultOP

typedef utility::pointer::shared_ptr< SCS_Antibody_Database_Result > protocols::antibody::grafting::SCS_Antibody_Database_ResultOP

SCS_BaseCOP

typedef utility::pointer::shared_ptr< SCS_Base const > protocols::antibody::grafting::SCS_BaseCOP

SCS_BaseOP

typedef utility::pointer::shared_ptr< SCS_Base > protocols::antibody::grafting::SCS_BaseOP

SCS_BlastPlusCOP

typedef utility::pointer::shared_ptr< SCS_BlastPlus const > protocols::antibody::grafting::SCS_BlastPlusCOP

SCS_BlastPlusOP

typedef utility::pointer::shared_ptr< SCS_BlastPlus > protocols::antibody::grafting::SCS_BlastPlusOP

SCS_BlastResultCOP

typedef utility::pointer::shared_ptr< SCS_BlastResult const > protocols::antibody::grafting::SCS_BlastResultCOP

SCS_BlastResultOP

typedef utility::pointer::shared_ptr< SCS_BlastResult > protocols::antibody::grafting::SCS_BlastResultOP

SCS_FunctorCOP

typedef utility::pointer::shared_ptr< SCS_Functor const > protocols::antibody::grafting::SCS_FunctorCOP

SCS_FunctorOP

typedef utility::pointer::shared_ptr< SCS_Functor > protocols::antibody::grafting::SCS_FunctorOP

SCS_LoopOverSCsCOP

typedef utility::pointer::shared_ptr< SCS_LoopOverSCs const > protocols::antibody::grafting::SCS_LoopOverSCsCOP

SCS_LoopOverSCsOP

typedef utility::pointer::shared_ptr< SCS_LoopOverSCs > protocols::antibody::grafting::SCS_LoopOverSCsOP

SCS_ResultCOP

typedef utility::pointer::shared_ptr< SCS_Result const > protocols::antibody::grafting::SCS_ResultCOP

SCS_ResultOP

typedef utility::pointer::shared_ptr< SCS_Result > protocols::antibody::grafting::SCS_ResultOP

SCS_ResultsCOP

typedef utility::pointer::shared_ptr< SCS_Results const > protocols::antibody::grafting::SCS_ResultsCOP

SCS_ResultSetCOP

typedef utility::pointer::shared_ptr< SCS_ResultSet const > protocols::antibody::grafting::SCS_ResultSetCOP

SCS_ResultSetOP

typedef utility::pointer::shared_ptr< SCS_ResultSet > protocols::antibody::grafting::SCS_ResultSetOP

SCS_ResultsOP

typedef utility::pointer::shared_ptr< SCS_Results > protocols::antibody::grafting::SCS_ResultsOP

SCS_SubstitutionMatrixResultCOP

typedef utility::pointer::shared_ptr< SCS_SubstitutionMatrixResult const > protocols::antibody::grafting::SCS_SubstitutionMatrixResultCOP

SCS_SubstitutionMatrixResultOP

typedef utility::pointer::shared_ptr< SCS_SubstitutionMatrixResult > protocols::antibody::grafting::SCS_SubstitutionMatrixResultOP

Function Documentation

antibody_grafting_usable()

bool protocols::antibody::grafting::antibody_grafting_usable

(

)

Check if regex library is functional.

parse_plain_text_with_columns()

utility::vector0< std::map<std::string, std::string> > protocols::antibody::grafting::parse_plain_text_with_columns	(	std::string	file_name,
		std::string	legend_prefix = "# ",
		char	legend_separator = ' ',
		std::string	data_prefix = "",
		char	data_separator = ' '
	)

helper function to parse plain text for BLAST result and filter data