#include <ConvertVirtualToRealMover.hh>
Inheritance diagram for protocols::simple_moves::ConvertVirtualToRealMover:
Public Member Functions | |
| ConvertVirtualToRealMover () | |
| ConvertVirtualToRealMover (core::select::residue_selector::ResidueSelectorCOP selector) | |
| Constructor with residue selector. If you need a particular set of residues, use the ReturnSubsetResidueSelector. More... | |
| ConvertVirtualToRealMover (ConvertVirtualToRealMover const &src) | |
| ~ConvertVirtualToRealMover () override | |
| void | set_residue_selector (core::select::residue_selector::ResidueSelectorCOP selector) |
| Set the residue selector. If you need a particular set of residues, use the ReturnSubsetResidueSelector. More... | |
| void | apply (core::pose::Pose &pose) override |
| Main Method. More... | |
| void | show (std::ostream &output=std::cout) const override |
| Outputs details about the Mover, including current settings. More... | |
| std::string | get_name () const override |
| Each derived class must specify its name. The class name. More... | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override |
| parse XML tag (to use this Mover in Rosetta Scripts) More... | |
| protocols::moves::MoverOP | fresh_instance () const override |
| required in the context of the parser/scripting scheme More... | |
| protocols::moves::MoverOP | clone () const override |
| required in the context of the parser/scripting scheme More... | |
| void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const override |
| Provide the citation. More... | |
 Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual MoverOP | create () |
| MoverCOP | get_self_ptr () const |
| MoverOP | get_self_ptr () |
| MoverCAP | get_self_weak_ptr () const |
| MoverAP | get_self_weak_ptr () |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| void | set_type (std::string const &setting) |
| Set the 'type' string. More... | |
| std::string | get_type () const |
| void | type (const std::string &type_in) |
| Set the 'type' string. More... | |
| std::string const & | type () const |
| Get the set 'type' string. More... | |
| virtual void | set_input_pose (PoseCOP pose) |
| setter for poses contained for rms More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | set_current_tag (std::string const &new_tag) |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| virtual core::Real | last_proposal_density_ratio () |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
Static Public Member Functions | |
| static std::string | mover_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
| Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
Private Attributes | |
| core::select::residue_selector::ResidueSelectorCOP | selector_ |
| The ResidueSelector to use. More... | |
Additional Inherited Members | |
| Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef std::list< std::string > | Strings |
| Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
Detailed Description
Mover for switching from VIRTUAL residues to REAL residues. A VIRTUAL residue is one that is not scored or output.
If no residue_selector is set, will work on ALL residues
See also:
FAToVirtualMover
Constructor & Destructor Documentation
◆ ConvertVirtualToRealMover() [1/3]
| protocols::simple_moves::ConvertVirtualToRealMover::ConvertVirtualToRealMover | ( | ) |
◆ ConvertVirtualToRealMover() [2/3]
| protocols::simple_moves::ConvertVirtualToRealMover::ConvertVirtualToRealMover | ( | core::select::residue_selector::ResidueSelectorCOP | selector | ) |
Constructor with residue selector. If you need a particular set of residues, use the ReturnSubsetResidueSelector.
◆ ConvertVirtualToRealMover() [3/3]
| protocols::simple_moves::ConvertVirtualToRealMover::ConvertVirtualToRealMover | ( | ConvertVirtualToRealMover const & | src | ) |
References selector_.
◆ ~ConvertVirtualToRealMover()
|
overridedefault |
Member Function Documentation
◆ apply()
|
overridevirtual |
Main Method.
Implements protocols::moves::Mover.
References core::chemical::ResidueType::is_virtual_residue(), core::pose::Pose::residue_type(), selector_, core::pose::Pose::total_residue(), protocols::simple_moves::TR(), and core::pose::Pose::virtual_to_real().
Referenced by protocols::carbohydrates::GlycanTreeModeler::apply().
◆ clone()
|
overridevirtual |
required in the context of the parser/scripting scheme
Reimplemented from protocols::moves::Mover.
◆ fresh_instance()
|
overridevirtual |
required in the context of the parser/scripting scheme
Reimplemented from protocols::moves::Mover.
◆ get_name()
|
overridevirtual |
Each derived class must specify its name. The class name.
Implements protocols::moves::Mover.
References mover_name().
◆ mover_name()
|
static |
◆ parse_my_tag()
|
overridevirtual |
parse XML tag (to use this Mover in Rosetta Scripts)
Reimplemented from protocols::moves::Mover.
References core::select::residue_selector::parse_residue_selector(), and selector_.
◆ provide_citation_info()
|
overridevirtual |
Provide the citation.
Reimplemented from protocols::moves::Mover.
References mover_name(), and selector_.
◆ provide_xml_schema()
|
static |
◆ set_residue_selector()
| void protocols::simple_moves::ConvertVirtualToRealMover::set_residue_selector | ( | core::select::residue_selector::ResidueSelectorCOP | selector | ) |
Set the residue selector. If you need a particular set of residues, use the ReturnSubsetResidueSelector.
References selector_.
Referenced by protocols::carbohydrates::GlycanTreeModeler::apply().
◆ show()
|
overridevirtual |
Outputs details about the Mover, including current settings.
Ideally, a child Mover should call Mover.show() and add additional information particular to that Mover.
Reimplemented from protocols::moves::Mover.
References protocols::moves::Mover::show().
Referenced by protocols::simple_moves::operator<<().
Member Data Documentation
◆ selector_
|
private |
The ResidueSelector to use.
Referenced by apply(), ConvertVirtualToRealMover(), parse_my_tag(), provide_citation_info(), and set_residue_selector().
The documentation for this class was generated from the following files:
- src/protocols/simple_moves/ConvertVirtualToRealMover.hh
- src/protocols/simple_moves/ConvertVirtualToRealMover.cc
