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protocols::stepwise::screener Namespace Reference

Classes

class  AlignRMSD_Screener
 
class  AnchorSugarScreener
 
class  BaseBinMapUpdater
 
class  BaseCentroidScreener
 
class  BulgeApplier
 
class  CentroidDistanceScreener
 
class  FastForwardToNextResidueAlternative
 
class  FastForwardToNextRigidBody
 
class  IntegrationTestBreaker
 
class  O2PrimeScreener
 
class  PackScreener
 
class  PartitionContactScreener
 
class  PhosphateScreener
 
class  PoseSelectionScreener
 
class  ProteinCCD_ClosureScreener
 
class  ResidueContactScreener
 
class  RNA_ChainClosableGeometryResidueBasedScreener
 
class  RNA_ChainClosableGeometryScreener
 
class  RNA_ChainClosableGeometryStubBasedScreener
 
class  RNA_ChainClosureScreener
 
class  SampleApplier
 
class  Scorer
 
class  StepWiseResiduePairScreener
 
class  StepWiseScreener
 
class  StubApplier
 
class  StubDistanceScreener
 
class  SugarInstantiator
 
class  TagDefinition
 
class  VDW_BinScreener
 

Typedefs

typedef utility::pointer::shared_ptr< AlignRMSD_Screener > AlignRMSD_ScreenerOP
 
typedef utility::pointer::shared_ptr< AlignRMSD_Screener const > AlignRMSD_ScreenerCOP
 
typedef utility::pointer::shared_ptr< AnchorSugarScreener > AnchorSugarScreenerOP
 
typedef utility::pointer::shared_ptr< AnchorSugarScreener const > AnchorSugarScreenerCOP
 
typedef utility::pointer::shared_ptr< BaseBinMapUpdater > BaseBinMapUpdaterOP
 
typedef utility::pointer::shared_ptr< BaseBinMapUpdater const > BaseBinMapUpdaterCOP
 
typedef utility::pointer::shared_ptr< BaseCentroidScreener > BaseCentroidScreenerOP
 
typedef utility::pointer::shared_ptr< BaseCentroidScreener const > BaseCentroidScreenerCOP
 
typedef utility::pointer::shared_ptr< BulgeApplier > BulgeApplierOP
 
typedef utility::pointer::shared_ptr< BulgeApplier const > BulgeApplierCOP
 
typedef utility::pointer::shared_ptr< CentroidDistanceScreener > CentroidDistanceScreenerOP
 
typedef utility::pointer::shared_ptr< CentroidDistanceScreener const > CentroidDistanceScreenerCOP
 
typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative > FastForwardToNextResidueAlternativeOP
 
typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative const > FastForwardToNextResidueAlternativeCOP
 
typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody > FastForwardToNextRigidBodyOP
 
typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody const > FastForwardToNextRigidBodyCOP
 
typedef utility::pointer::shared_ptr< IntegrationTestBreaker > IntegrationTestBreakerOP
 
typedef utility::pointer::shared_ptr< IntegrationTestBreaker const > IntegrationTestBreakerCOP
 
typedef utility::pointer::shared_ptr< O2PrimeScreener > O2PrimeScreenerOP
 
typedef utility::pointer::shared_ptr< O2PrimeScreener const > O2PrimeScreenerCOP
 
typedef utility::pointer::shared_ptr< PackScreener > PackScreenerOP
 
typedef utility::pointer::shared_ptr< PackScreener const > PackScreenerCOP
 
typedef utility::pointer::shared_ptr< PartitionContactScreener > PartitionContactScreenerOP
 
typedef utility::pointer::shared_ptr< PartitionContactScreener const > PartitionContactScreenerCOP
 
typedef utility::pointer::shared_ptr< PhosphateScreener > PhosphateScreenerOP
 
typedef utility::pointer::shared_ptr< PhosphateScreener const > PhosphateScreenerCOP
 
typedef utility::pointer::shared_ptr< PoseSelectionScreener > PoseSelectionScreenerOP
 
typedef utility::pointer::shared_ptr< PoseSelectionScreener const > PoseSelectionScreenerCOP
 
typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener > ProteinCCD_ClosureScreenerOP
 
typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener const > ProteinCCD_ClosureScreenerCOP
 
typedef utility::pointer::shared_ptr< ResidueContactScreener > ResidueContactScreenerOP
 
typedef utility::pointer::shared_ptr< ResidueContactScreener const > ResidueContactScreenerCOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener > RNA_ChainClosableGeometryResidueBasedScreenerOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener const > RNA_ChainClosableGeometryResidueBasedScreenerCOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener > RNA_ChainClosableGeometryScreenerOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener const > RNA_ChainClosableGeometryScreenerCOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener > RNA_ChainClosableGeometryStubBasedScreenerOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener const > RNA_ChainClosableGeometryStubBasedScreenerCOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener > RNA_ChainClosureScreenerOP
 
typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener const > RNA_ChainClosureScreenerCOP
 
typedef utility::pointer::shared_ptr< SampleApplier > SampleApplierOP
 
typedef utility::pointer::shared_ptr< SampleApplier const > SampleApplierCOP
 
typedef utility::pointer::shared_ptr< Scorer > ScorerOP
 
typedef utility::pointer::shared_ptr< Scorer const > ScorerCOP
 
typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener > StepWiseResiduePairScreenerOP
 
typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener const > StepWiseResiduePairScreenerCOP
 
typedef utility::pointer::shared_ptr< StepWiseScreener > StepWiseScreenerOP
 
typedef utility::pointer::shared_ptr< StepWiseScreener const > StepWiseScreenerCOP
 
typedef utility::pointer::shared_ptr< StubApplier > StubApplierOP
 
typedef utility::pointer::shared_ptr< StubApplier const > StubApplierCOP
 
typedef utility::pointer::shared_ptr< StubDistanceScreener > StubDistanceScreenerOP
 
typedef utility::pointer::shared_ptr< StubDistanceScreener const > StubDistanceScreenerCOP
 
typedef utility::pointer::shared_ptr< SugarInstantiator > SugarInstantiatorOP
 
typedef utility::pointer::shared_ptr< SugarInstantiator const > SugarInstantiatorCOP
 
typedef utility::pointer::shared_ptr< TagDefinition > TagDefinitionOP
 
typedef utility::pointer::shared_ptr< TagDefinition const > TagDefinitionCOP
 
typedef utility::pointer::shared_ptr< VDW_BinScreener > VDW_BinScreenerOP
 
typedef utility::pointer::shared_ptr< VDW_BinScreener const > VDW_BinScreenerCOP
 

Enumerations

enum  StepWiseScreenerType {
  NONE , ALIGN_RMSD , ANCHOR_SUGAR , ATR_REP ,
  BASE_BIN_MAP , BASE_CENTROID , BULGE_APPLIER , CENTROID_DISTANCE ,
  FAST_FORWARD_TO_NEXT_RIGID_BODY , FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE , INTEGRATION_TEST , O2PRIME_PACK ,
  PACK , PARTITION_CONTACT , PHOSPHATE_PACK , POSE_SELECTION ,
  PROTEIN_ATR_REP , RESIDUE_APPLIER , RESIDUE_CONTACT , PROTEIN_CCD_CLOSURE ,
  RNA_CHAIN_CLOSURE , RNA_CHAIN_CLOSABLE_GEOMETRY , RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED , RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED ,
  SAMPLE_APPLIER , SAMPLE_APPLIER_WITH_RESIDUE_LIST , SCORER , SIMPLE_POSE_SELECTION ,
  SIMPLE_RMSD , STUB_APPLIER , STUB_DISTANCE , SUGAR_INSTANTIATOR ,
  TAG_DEFINITION , VDW_ATR_REP , VDW_BIN
}
 

Functions

void fast_forward_to_next_residue_pair (sampler::StepWiseSamplerOP sampler, core::Size const res1, core::Size const res2)
 

Typedef Documentation

◆ AlignRMSD_ScreenerCOP

typedef utility::pointer::shared_ptr< AlignRMSD_Screener const > protocols::stepwise::screener::AlignRMSD_ScreenerCOP

◆ AlignRMSD_ScreenerOP

typedef utility::pointer::shared_ptr< AlignRMSD_Screener > protocols::stepwise::screener::AlignRMSD_ScreenerOP

◆ AnchorSugarScreenerCOP

typedef utility::pointer::shared_ptr< AnchorSugarScreener const > protocols::stepwise::screener::AnchorSugarScreenerCOP

◆ AnchorSugarScreenerOP

typedef utility::pointer::shared_ptr< AnchorSugarScreener > protocols::stepwise::screener::AnchorSugarScreenerOP

◆ BaseBinMapUpdaterCOP

typedef utility::pointer::shared_ptr< BaseBinMapUpdater const > protocols::stepwise::screener::BaseBinMapUpdaterCOP

◆ BaseBinMapUpdaterOP

typedef utility::pointer::shared_ptr< BaseBinMapUpdater > protocols::stepwise::screener::BaseBinMapUpdaterOP

◆ BaseCentroidScreenerCOP

typedef utility::pointer::shared_ptr< BaseCentroidScreener const > protocols::stepwise::screener::BaseCentroidScreenerCOP

◆ BaseCentroidScreenerOP

typedef utility::pointer::shared_ptr< BaseCentroidScreener > protocols::stepwise::screener::BaseCentroidScreenerOP

◆ BulgeApplierCOP

typedef utility::pointer::shared_ptr< BulgeApplier const > protocols::stepwise::screener::BulgeApplierCOP

◆ BulgeApplierOP

typedef utility::pointer::shared_ptr< BulgeApplier > protocols::stepwise::screener::BulgeApplierOP

◆ CentroidDistanceScreenerCOP

typedef utility::pointer::shared_ptr< CentroidDistanceScreener const > protocols::stepwise::screener::CentroidDistanceScreenerCOP

◆ CentroidDistanceScreenerOP

typedef utility::pointer::shared_ptr< CentroidDistanceScreener > protocols::stepwise::screener::CentroidDistanceScreenerOP

◆ FastForwardToNextResidueAlternativeCOP

typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative const > protocols::stepwise::screener::FastForwardToNextResidueAlternativeCOP

◆ FastForwardToNextResidueAlternativeOP

typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative > protocols::stepwise::screener::FastForwardToNextResidueAlternativeOP

◆ FastForwardToNextRigidBodyCOP

typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody const > protocols::stepwise::screener::FastForwardToNextRigidBodyCOP

◆ FastForwardToNextRigidBodyOP

typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody > protocols::stepwise::screener::FastForwardToNextRigidBodyOP

◆ IntegrationTestBreakerCOP

typedef utility::pointer::shared_ptr< IntegrationTestBreaker const > protocols::stepwise::screener::IntegrationTestBreakerCOP

◆ IntegrationTestBreakerOP

typedef utility::pointer::shared_ptr< IntegrationTestBreaker > protocols::stepwise::screener::IntegrationTestBreakerOP

◆ O2PrimeScreenerCOP

typedef utility::pointer::shared_ptr< O2PrimeScreener const > protocols::stepwise::screener::O2PrimeScreenerCOP

◆ O2PrimeScreenerOP

typedef utility::pointer::shared_ptr< O2PrimeScreener > protocols::stepwise::screener::O2PrimeScreenerOP

◆ PackScreenerCOP

typedef utility::pointer::shared_ptr< PackScreener const > protocols::stepwise::screener::PackScreenerCOP

◆ PackScreenerOP

typedef utility::pointer::shared_ptr< PackScreener > protocols::stepwise::screener::PackScreenerOP

◆ PartitionContactScreenerCOP

typedef utility::pointer::shared_ptr< PartitionContactScreener const > protocols::stepwise::screener::PartitionContactScreenerCOP

◆ PartitionContactScreenerOP

typedef utility::pointer::shared_ptr< PartitionContactScreener > protocols::stepwise::screener::PartitionContactScreenerOP

◆ PhosphateScreenerCOP

typedef utility::pointer::shared_ptr< PhosphateScreener const > protocols::stepwise::screener::PhosphateScreenerCOP

◆ PhosphateScreenerOP

typedef utility::pointer::shared_ptr< PhosphateScreener > protocols::stepwise::screener::PhosphateScreenerOP

◆ PoseSelectionScreenerCOP

typedef utility::pointer::shared_ptr< PoseSelectionScreener const > protocols::stepwise::screener::PoseSelectionScreenerCOP

◆ PoseSelectionScreenerOP

typedef utility::pointer::shared_ptr< PoseSelectionScreener > protocols::stepwise::screener::PoseSelectionScreenerOP

◆ ProteinCCD_ClosureScreenerCOP

typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener const > protocols::stepwise::screener::ProteinCCD_ClosureScreenerCOP

◆ ProteinCCD_ClosureScreenerOP

typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener > protocols::stepwise::screener::ProteinCCD_ClosureScreenerOP

◆ ResidueContactScreenerCOP

typedef utility::pointer::shared_ptr< ResidueContactScreener const > protocols::stepwise::screener::ResidueContactScreenerCOP

◆ ResidueContactScreenerOP

typedef utility::pointer::shared_ptr< ResidueContactScreener > protocols::stepwise::screener::ResidueContactScreenerOP

◆ RNA_ChainClosableGeometryResidueBasedScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreenerCOP

◆ RNA_ChainClosableGeometryResidueBasedScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreenerOP

◆ RNA_ChainClosableGeometryScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryScreenerCOP

◆ RNA_ChainClosableGeometryScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryScreenerOP

◆ RNA_ChainClosableGeometryStubBasedScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreenerCOP

◆ RNA_ChainClosableGeometryStubBasedScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreenerOP

◆ RNA_ChainClosureScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener const > protocols::stepwise::screener::RNA_ChainClosureScreenerCOP

◆ RNA_ChainClosureScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener > protocols::stepwise::screener::RNA_ChainClosureScreenerOP

◆ SampleApplierCOP

typedef utility::pointer::shared_ptr< SampleApplier const > protocols::stepwise::screener::SampleApplierCOP

◆ SampleApplierOP

typedef utility::pointer::shared_ptr< SampleApplier > protocols::stepwise::screener::SampleApplierOP

◆ ScorerCOP

typedef utility::pointer::shared_ptr< Scorer const > protocols::stepwise::screener::ScorerCOP

◆ ScorerOP

typedef utility::pointer::shared_ptr< Scorer > protocols::stepwise::screener::ScorerOP

◆ StepWiseResiduePairScreenerCOP

typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener const > protocols::stepwise::screener::StepWiseResiduePairScreenerCOP

◆ StepWiseResiduePairScreenerOP

typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener > protocols::stepwise::screener::StepWiseResiduePairScreenerOP

◆ StepWiseScreenerCOP

typedef utility::pointer::shared_ptr< StepWiseScreener const > protocols::stepwise::screener::StepWiseScreenerCOP

◆ StepWiseScreenerOP

typedef utility::pointer::shared_ptr< StepWiseScreener > protocols::stepwise::screener::StepWiseScreenerOP

◆ StubApplierCOP

typedef utility::pointer::shared_ptr< StubApplier const > protocols::stepwise::screener::StubApplierCOP

◆ StubApplierOP

typedef utility::pointer::shared_ptr< StubApplier > protocols::stepwise::screener::StubApplierOP

◆ StubDistanceScreenerCOP

typedef utility::pointer::shared_ptr< StubDistanceScreener const > protocols::stepwise::screener::StubDistanceScreenerCOP

◆ StubDistanceScreenerOP

typedef utility::pointer::shared_ptr< StubDistanceScreener > protocols::stepwise::screener::StubDistanceScreenerOP

◆ SugarInstantiatorCOP

typedef utility::pointer::shared_ptr< SugarInstantiator const > protocols::stepwise::screener::SugarInstantiatorCOP

◆ SugarInstantiatorOP

typedef utility::pointer::shared_ptr< SugarInstantiator > protocols::stepwise::screener::SugarInstantiatorOP

◆ TagDefinitionCOP

typedef utility::pointer::shared_ptr< TagDefinition const > protocols::stepwise::screener::TagDefinitionCOP

◆ TagDefinitionOP

typedef utility::pointer::shared_ptr< TagDefinition > protocols::stepwise::screener::TagDefinitionOP

◆ VDW_BinScreenerCOP

typedef utility::pointer::shared_ptr< VDW_BinScreener const > protocols::stepwise::screener::VDW_BinScreenerCOP

◆ VDW_BinScreenerOP

typedef utility::pointer::shared_ptr< VDW_BinScreener > protocols::stepwise::screener::VDW_BinScreenerOP

Enumeration Type Documentation

◆ StepWiseScreenerType

enum protocols::stepwise::screener::StepWiseScreenerType
Enumerator
NONE 
ALIGN_RMSD 
ANCHOR_SUGAR 
ATR_REP 
BASE_BIN_MAP 
BASE_CENTROID 
BULGE_APPLIER 
CENTROID_DISTANCE 
FAST_FORWARD_TO_NEXT_RIGID_BODY 
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE 
INTEGRATION_TEST 
O2PRIME_PACK 
PACK 
PARTITION_CONTACT 
PHOSPHATE_PACK 
POSE_SELECTION 
PROTEIN_ATR_REP 
RESIDUE_APPLIER 
RESIDUE_CONTACT 
PROTEIN_CCD_CLOSURE 
RNA_CHAIN_CLOSURE 
RNA_CHAIN_CLOSABLE_GEOMETRY 
RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED 
RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED 
SAMPLE_APPLIER 
SAMPLE_APPLIER_WITH_RESIDUE_LIST 
SCORER 
SIMPLE_POSE_SELECTION 
SIMPLE_RMSD 
STUB_APPLIER 
STUB_DISTANCE 
SUGAR_INSTANTIATOR 
TAG_DEFINITION 
VDW_ATR_REP 
VDW_BIN 

Function Documentation

◆ fast_forward_to_next_residue_pair()

void protocols::stepwise::screener::fast_forward_to_next_residue_pair ( sampler::StepWiseSamplerOP  sampler,
core::Size const  res1,
core::Size const  res2 
)

References protocols::toolbox::RIGID_BODY_WITH_RESIDUE_ALTERNATIVES, and protocols::toolbox::RIGID_BODY_WITH_RESIDUE_LIST.

Referenced by protocols::stepwise::screener::RNA_ChainClosureScreener::fast_forward(), and protocols::stepwise::screener::StepWiseResiduePairScreener::fast_forward().

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