util.hh File Reference

util functions for RECCES and thermal_sampler More...

#include <core/types.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/id/TorsionID.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <utility/io/ozstream.hh>
#include <string>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::recces

Functions
utility::vector1< core::scoring::ScoreType > const &	protocols::recces::get_scoretypes ()
core::Size	protocols::recces::data_dim (utility::vector1< core::scoring::ScoreType > const &score_types)
core::Size	protocols::recces::data_dim ()
void	protocols::recces::update_scores (utility::vector1< float > &scores, core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scorefxn)
void	protocols::recces::update_scores (utility::vector1< float > &scores, core::pose::Pose &pose, core::scoring::ScoreFunctionCOP scorefxn, utility::vector1< core::scoring::ScoreType > const &score_types)
void	protocols::recces::fill_data (utility::vector1< float > &data, core::Size const count, utility::vector1< float > const &scores)
template<typename T >
void	protocols::recces::vector2disk_in1d (std::string const &out_filename, utility::vector1< T > const &out_vector)
template<typename T >
void	protocols::recces::vector2disk_in2d (std::string const &out_filename, core::Size const dim1, core::Size const dim2, utility::vector1< T > const &out_vector)
void	protocols::recces::print_base_centroid_atoms_for_rb_entropy (core::conformation::Residue const &rsd, std::string filename_xyz)
utility::vector1< core::Real >	protocols::recces::get_torsions (utility::vector1< core::id::TorsionID > const &torsion_ids, core::pose::Pose const &pose)
	used to output torsions from pose – useful for clustering states, etc. More...

Detailed Description

util functions for RECCES and thermal_sampler

Author

Andy Watkins

Fang-Chieh Chou

Rhiju Das