LigandBaseProtocol.hh File Reference

#include <core/types.hh>
#include <core/import_pose/atom_tree_diffs/atom_tree_diff.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.fwd.hh>
#include <core/pack/task/PackerTask.fwd.hh>
#include <core/scoring/constraints/Constraint.fwd.hh>
#include <core/scoring/func/Func.fwd.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <set>
#include <core/conformation/Residue.fwd.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/FArray1D.fwd.hh>

Classes
class	protocols::ligand_docking::LigandBaseProtocol
	Shared functionality for protocols that dock ligands. More...

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::ligand_docking

Typedefs
typedef utility::pointer::shared_ptr< LigandBaseProtocol >	protocols::ligand_docking::LigandBaseProtocolOP
typedef utility::pointer::shared_ptr< LigandBaseProtocol const >	protocols::ligand_docking::LigandBaseProtocolCOP

Functions
void	protocols::ligand_docking::select_best_poses (core::import_pose::atom_tree_diffs::AtomTreeDiff const &atdiff, std::set< std::string > &tags_out)
	Convenience wrapper: selects the best ligand docking results from a silent file and appends their tags to the supplied set. More...
void	protocols::ligand_docking::select_best_poses (core::import_pose::atom_tree_diffs::AtomTreeDiff const &atdiff, core::import_pose::atom_tree_diffs::ScoresPairList &scores_out, core::Real to_keep=0.05)
	Selects the best ligand docking results from a silent file and appends their scores to the supplied list. More...
void	protocols::ligand_docking::select_best_poses (core::import_pose::atom_tree_diffs::ScoresPairList const &scores_in, core::import_pose::atom_tree_diffs::ScoresPairList &scores_out, core::Real to_keep=0.05)
	Trims scores_in based on ligand_is_touching (if present) and then by total_score. More...
void	protocols::ligand_docking::frac_atoms_within (core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, utility::vector1< core::Real > const &cutoffs, utility::vector1< core::Real > &fractions_out)
	Without superimposing, automorphically computes the fraction of atoms in these residues that are within the given cutoff(s) of each other. More...

Detailed Description

Author

Ian W. Davis