protocols::pose_creation Namespace Reference

Classes
class	ExtendedPoseMover
class	ExtendedPoseMoverCreator
class	MakeJunctionsMover
class	MakeJunctionsMoverCreator
class	MakePolyXMover
class	MakePolyXMoverCreator
class	MergePDBatOverlapMover
class	MergePDBatOverlapMoverCreator
class	MergePDBMover
class	MergePDBMoverCreator
class	PoseFromSequenceMover
	A class for generating a pose from a sequence/fasta. More...
class	PoseFromSequenceMoverCreator
class	SliceToMiniProteinMover
class	SliceToMiniProteinMoverCreator

Typedefs
typedef utility::pointer::shared_ptr< ExtendedPoseMover >	ExtendedPoseMoverOP
typedef utility::pointer::shared_ptr< ExtendedPoseMover const >	ExtendedPoseMoverCOP
typedef utility::pointer::shared_ptr< MakeJunctionsMover >	MakeJunctionsMoverOP
typedef utility::pointer::shared_ptr< MakeJunctionsMover const >	MakeJunctionsMoverCOP
typedef utility::pointer::shared_ptr< MakePolyXMover >	MakePolyXMoverOP
typedef utility::pointer::shared_ptr< MergePDBatOverlapMover >	MergePDBatOverlapMoverOP
typedef utility::pointer::shared_ptr< MergePDBatOverlapMover const >	MergePDBatOverlapMoverCOP
typedef utility::pointer::shared_ptr< MergePDBMover >	MergePDBMoverOP
typedef utility::pointer::shared_ptr< MergePDBMover const >	MergePDBMoverCOP
using	PoseFromSequenceMoverOP = utility::pointer::shared_ptr< PoseFromSequenceMover >
using	PoseFromSequenceMoverCOP = utility::pointer::shared_ptr< PoseFromSequenceMover const >
typedef utility::pointer::shared_ptr< SliceToMiniProteinMover >	SliceToMiniProteinMoverOP
typedef utility::pointer::shared_ptr< SliceToMiniProteinMover const >	SliceToMiniProteinMoverCOP

Functions
static basic::Tracer	TR ("protocols.pose_creation.MakeJunctionsMover")
std::ostream &	operator<< (std::ostream &os, PoseFromSequenceMover const &mover)
	private methods /// More...

Typedef Documentation

ExtendedPoseMoverCOP

typedef utility::pointer::shared_ptr<ExtendedPoseMover const> protocols::pose_creation::ExtendedPoseMoverCOP

ExtendedPoseMoverOP

typedef utility::pointer::shared_ptr<ExtendedPoseMover> protocols::pose_creation::ExtendedPoseMoverOP

MakeJunctionsMoverCOP

typedef utility::pointer::shared_ptr< MakeJunctionsMover const > protocols::pose_creation::MakeJunctionsMoverCOP

MakeJunctionsMoverOP

typedef utility::pointer::shared_ptr< MakeJunctionsMover > protocols::pose_creation::MakeJunctionsMoverOP

MakePolyXMoverOP

typedef utility::pointer::shared_ptr< MakePolyXMover > protocols::pose_creation::MakePolyXMoverOP

MergePDBatOverlapMoverCOP

typedef utility::pointer::shared_ptr< MergePDBatOverlapMover const > protocols::pose_creation::MergePDBatOverlapMoverCOP

MergePDBatOverlapMoverOP

typedef utility::pointer::shared_ptr< MergePDBatOverlapMover > protocols::pose_creation::MergePDBatOverlapMoverOP

MergePDBMoverCOP

typedef utility::pointer::shared_ptr< MergePDBMover const > protocols::pose_creation::MergePDBMoverCOP

MergePDBMoverOP

typedef utility::pointer::shared_ptr< MergePDBMover > protocols::pose_creation::MergePDBMoverOP

PoseFromSequenceMoverCOP

using protocols::pose_creation::PoseFromSequenceMoverCOP = typedef utility::pointer::shared_ptr< PoseFromSequenceMover const >

PoseFromSequenceMoverOP

using protocols::pose_creation::PoseFromSequenceMoverOP = typedef utility::pointer::shared_ptr< PoseFromSequenceMover >

SliceToMiniProteinMoverCOP

typedef utility::pointer::shared_ptr< SliceToMiniProteinMover const > protocols::pose_creation::SliceToMiniProteinMoverCOP

SliceToMiniProteinMoverOP

typedef utility::pointer::shared_ptr< SliceToMiniProteinMover > protocols::pose_creation::SliceToMiniProteinMoverOP

Function Documentation

operator<<()

std::ostream & protocols::pose_creation::operator<<	(	std::ostream &	os,
		PoseFromSequenceMover const &	mover
	)

private methods ///

References protocols::pose_creation::PoseFromSequenceMover::show().

TR()

static basic::Tracer protocols::pose_creation::TR ( "protocols.pose_creation.MakeJunctionsMover"  )

static

Referenced by protocols::pose_creation::MakePolyXMover::apply(), protocols::pose_creation::MergePDBMover::apply(), protocols::pose_creation::PoseFromSequenceMover::apply(), protocols::pose_creation::MakeJunctionsMover::assign_seq(), protocols::pose_creation::MergePDBatOverlapMover::assign_seq(), protocols::pose_creation::MergePDBMover::copy_sequence(), protocols::pose_creation::MergePDBMover::determine_overlap(), protocols::pose_creation::SliceToMiniProteinMover::filter_chunks(), protocols::pose_creation::MergePDBMover::generate_overlaps(), protocols::pose_creation::SliceToMiniProteinMover::get_additional_output(), protocols::pose_creation::MergePDBatOverlapMover::merge_junction_sequence(), protocols::pose_creation::MergePDBatOverlapMover::merge_poses(), protocols::pose_creation::MergePDBatOverlapMover::minimize_overlap(), protocols::pose_creation::MergePDBMover::pack_and_minimize(), protocols::pose_creation::MakePolyXMover::parse_my_tag(), protocols::pose_creation::MergePDBMover::parse_my_tag(), protocols::pose_creation::PoseFromSequenceMover::parse_my_tag(), and protocols::pose_creation::SliceToMiniProteinMover::parse_ss().