Directory dependency graph for mhc_epitope_energy:
Files | |
| file | MHCEpitopeConstraint.cc |
| A constraint for MHC epitope scores Follows analogous file for Vikram K. Mulligan's NetChargeEnergy. | |
| file | MHCEpitopeConstraint.fwd.hh |
| Headers for a constraint for MHC epitope scores. | |
| file | MHCEpitopeConstraint.hh |
| Headers for a constraint for MHC epitope scores. | |
| file | MHCEpitopeEnergySetup.cc |
| A helper for the MHCEpitopeEnergy. | |
| file | MHCEpitopeEnergySetup.fwd.hh |
| Forward declarations for a helper class that stores the setup information for the MHCEpitopeEnergy score term. | |
| file | MHCEpitopeEnergySetup.hh |
| file | MHCEpitopePredictor.cc |
| Base class for an MHC epitope predictor, which takes a peptide (string) and returns a score predicting its risk of MHC binding (lower is lower risk, with 0 being none) | |
| file | MHCEpitopePredictor.fwd.hh |
| forward declaration for class MHCEpitopePredictor | |
| file | MHCEpitopePredictor.hh |
| Base class for an MHC epitope predictor, which takes a peptide (string) and returns a score predicting its risk of MHC binding (lower is lower risk, with 0 being none) | |
| file | MHCEpitopePredictorExternal.cc |
| MHC epitope predictor using calculations from an external program cached in an sqlite database. | |
| file | MHCEpitopePredictorExternal.fwd.hh |
| forward declaration for class MHCEpitopePredictorExternal | |
| file | MHCEpitopePredictorExternal.hh |
| MHC epitope predictor using calculations from an external program cached in an sqlite database. | |
| file | MHCEpitopePredictorMatrix.cc |
| MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others. | |
| file | MHCEpitopePredictorMatrix.fwd.hh |
| forward declaration for class MHCEpitopePredictorMatrix | |
| file | MHCEpitopePredictorMatrix.hh |
| MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others. | |
| file | MHCEpitopePredictorPreLoaded.cc |
| MHC epitope predictor with precomputed values loaded into a peptide->score map. | |
| file | MHCEpitopePredictorPreLoaded.fwd.hh |
| forward declaration for class MHCEpitopePredictorPreLoaded | |
| file | MHCEpitopePredictorPreLoaded.hh |
| file | MHCEpitopePredictorSVM.cc |
| Wraps NmerSVM into the mhc_epitope_energy scoreterm framework. | |
| file | MHCEpitopePredictorSVM.fwd.hh |
| forward declaration for class MHCEpitopePredictorSVM | |
| file | MHCEpitopePredictorSVM.hh |
| Wraps NmerSVM into the mhc_epitope_energy scoreterm framework. | |
