Directory dependency graph for per_residue_metrics:
Files | |
| file | CurrentProbabilityMetric.cc |
| A class for for returning just the probability of the amino acid currently present in the pose from a PerResidueProbabilitiesMetric. | |
| file | CurrentProbabilityMetric.fwd.hh |
| A class for returning just the probability of the amino acid currently present in the pose from a PerResidueProbabilitiesMetric. | |
| file | CurrentProbabilityMetric.hh |
| A class for returning just the probability of the amino acid currently present in the pose from a PerResidueProbabilitiesMetric. | |
| file | CurrentProbabilityMetricCreator.hh |
| A class for returning just the probability of the amino acid currently present in the pose from a PerResidueProbabilitiesMetric. | |
| file | HbondMetric.cc |
| A metric to report the total h-bonds of a residue, or from a set of residues to another set of residues. Use the SummaryMetric to get total hbonds of a selection or between selections. See the WaterMediatedBridgedHBondMetric for water-mediated h-bonds. | |
| file | HbondMetric.fwd.hh |
| A metric to report the total h-bonds of a residue, or from a set of residues to another set of residues. Use the SummaryMetric to get total hbonds of a selection or between selections. See the WaterMediatedBridgedHBondMetric for water-mediated h-bonds. | |
| file | HbondMetric.hh |
| A metric to report the total h-bonds of a residue, or from a set of residues to another set of residues. Use the SummaryMetric to get total hbonds of a selection or between selections. See the WaterMediatedBridgedHBondMetric for water-mediated h-bonds. | |
| file | LoadedProbabilitiesMetric.cc |
| A class to load a probabilities weights file into a PerResidueProbabilitiesMetric. | |
| file | LoadedProbabilitiesMetric.fwd.hh |
| A class to load a probabilities weights file into a PerResidueProbabilitiesMetric. | |
| file | LoadedProbabilitiesMetric.hh |
| A class to load a probabilities weights file into a PerResidueProbabilitiesMetric. | |
| file | LoadedProbabilitiesMetricCreator.hh |
| A class to load a probabilities weights file into a PerResidueProbabilitiesMetric. | |
| file | PerResidueClashMetric.cc |
| A SimpleMetric that calculates the number of atomic clashes per residue using the LJ radius (at 0). Can use a soft radius, which reduces it by 33%. | |
| file | PerResidueClashMetric.fwd.hh |
| A SimpleMetric that calculates the number of atomic clashes per residue using the LJ radius (at 0). Can use a soft radius, which reduces it by 33%. | |
| file | PerResidueClashMetric.hh |
| A SimpleMetric that calculates the number of atomic clashes per residue using the LJ radius (at 0). | |
| file | PerResidueDensityFitMetric.cc |
| A per-residue metric that will calculate the density fit for each residue using either a correlation or a zscore. | |
| file | PerResidueDensityFitMetric.fwd.hh |
| A per-residue metric that will calculate the density fit for each residue using either a correlation or a zscore. | |
| file | PerResidueDensityFitMetric.hh |
| A per-residue metric that will calculate the density fit for each residue using either a correlation or a zscore. | |
| file | PerResidueEnergyMetric.cc |
| A per-residue metric that will calculate/output per residue total energies or a specific score component. Correctly decomposes energies to per-residue. | |
| file | PerResidueEnergyMetric.fwd.hh |
| A per-residue metric that will calculate/output per residue total energies or a specific score component. Correctly decomposes energies to per-residue. | |
| file | PerResidueEnergyMetric.hh |
| A per-residue metric that will calculate/output per residue total energies or a specific score component. Correctly decomposes energies to per-residue. | |
| file | PerResidueGlycanLayerMetric.cc |
| A metric that outputs the layer of the glycan tree as measured by the residue distance to the root. | |
| file | PerResidueGlycanLayerMetric.fwd.hh |
| A metric that outputs the layer of the glycan tree as measured by the residue distance to the root. | |
| file | PerResidueGlycanLayerMetric.hh |
| A metric that outputs the layer of the glycan tree as measured by the residue distance to the root. | |
| file | PerResidueRMSDMetric.cc |
| A per-residue metric thtat will calculate the RMSD for each residue given in a residue selector to a reference pose. | |
| file | PerResidueRMSDMetric.fwd.hh |
| A per-residue metric thtat will calculate the RMSD for each residue given in a residue selector to a reference pose. | |
| file | PerResidueRMSDMetric.hh |
| A per-residue metric thtat will calculate the RMSD for each residue given in a residue selector to a reference pose. | |
| file | PerResidueSasaMetric.cc |
| A per-residue metric that will calculate SASA for each residue given in a selector. | |
| file | PerResidueSasaMetric.fwd.hh |
| A per-residue metric that will calculate SASA for each residue given in a selector. | |
| file | PerResidueSasaMetric.hh |
| A per-residue metric that will calculate SASA for each residue given in a selector. | |
| file | ProbabilityConservationMetric.cc |
| A class for calculating the conservation of a position given some predicted probabilities (using the relative Shannon Entropy). | |
| file | ProbabilityConservationMetric.fwd.hh |
| A class for calculating the conservation of a position given some predicted probabilities (using the relative Shannon Entropy). | |
| file | ProbabilityConservationMetric.hh |
| A class for calculating the conservation of a position given some predicted probabilities (using the relative Shannon Entropy). | |
| file | ProbabilityConservationMetricCreator.hh |
| A class for calculating the conservation of a position given some predicted probabilities (using the relative Shannon Entropy). | |
| file | SidechainNeighborCountMetric.cc |
| A metric for calculating each sidechains neighbors based on cones. This metric uses the same core code as the LayerSelector. It can be combined with the SimpleMetricSelector to select any set of residues based on burial. | |
| file | SidechainNeighborCountMetric.fwd.hh |
| A metric for calculating each sidechains neighbors based on cones. This metric uses the same core code as the LayerSelector. It can be combined with the SimpleMetricSelector to select any set of residues based on burial. | |
| file | SidechainNeighborCountMetric.hh |
| A metric for calculating each sidechains neighbors based on cones. This metric uses the same core code as the LayerSelector. It can be combined with the SimpleMetricSelector to select any set of residues based on burial. | |
| file | SidechainNeighborCountMetricCreator.hh |
| A metric for calculating each sidechains neighbors based on cones. This metric uses the same core code as the LayerSelector. It can be combined with the SimpleMetricSelector to select any set of residues based on burial. | |
| file | WaterMediatedHbondMetric.cc |
| A metric to measure hydrogen bonds between a set of residues that are water-mediated. Depth of 1 is default where one water mediates the interface between these residues. Depth can be set. Make sure to use the -include_waters flag to have Rosetta not ignore HOH. | |
| file | WaterMediatedHbondMetric.fwd.hh |
| A metric to measure hydrogen bonds between a set of residues that are water-mediated. Depth of 1 is default where one water mediates the interface between these residues. Depth can be set. Make sure to use the -include_waters flag to have Rosetta not ignore HOH. | |
| file | WaterMediatedHbondMetric.hh |
| A metric to measure hydrogen bonds between a set of residues that are water-mediated. Depth of 1 is default where one water mediates the interface between these residues. Depth can be set. Make sure to use the -include_waters flag to have Rosetta not ignore HOH. | |
