HelixHelixAngleFilter

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documentation written by Jonathan Weinstein jonathan.weinstein@weizmann.ac.il, Nov 2017

HelixHelixAngleFilter

finds a vector which is a linear regression of all backbone atoms in each TM span specified by the user. this filter calculates one of 3 things: 1. the crossing angle between the vecors 2. the distance between the vectors at the nearest point along the vectors 3. the closest distance between the helices (in actual atomic distance)

<HelixHelixAngleFilter name="(& string)" start_helix_1="(0 Size)" start_helix_2="(0 Size)" end_helix_1="(0 Size)" end_helix_2="(0 Size)" angle_min="(40.0 Real)" angle_max="(100.0 Real)" dist_min="(0.0 Real)" dist_max="(5.0 Real)" angle_or_dist="(angle string)" dist_by_atom="(true bool)"/>

start_helix_1 - optional - the starting residue of helix 1 in rosetta numbering
end_helix_1 - optional - the ending residue of helix 1 in rosetta numbering
start_helix_2 - optional - the starting residue of helix 2 in rosetta numbering
end_helix_2 - optional - the ending residue of helix 2 in rosetta numbering
angle_min - the minimal angle to allow
angle_max - the maximal angle to allow
dist_min - the minimal distance to allow
dist_max - the maximal distance to allow
angle_or_dist - a stirng specifying whether to calculate an ngle or distance (angle/dist, default is angle)
dist_by_atom - whether to calculate the distance by atom or vector
helix_num_1 - choose the helix 1 from the DSSP data of the pose (1 will be the first helix in the pose, 2 the second, etc.)
helix_num_2 - choose helix 2, same as 1

HelixHelixAngleFilter

HelixHelixAngleFilter

See also