AddChainBreak

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AddChainBreak

Adds a chainbreak at the specified position

<AddChainBreak name="(&string)" resnum="(&string)" change_foldtree="(1 &bool)" find_automatically="(0 &bool)" distance_cutoff="(2.5&Real)" remove="(0 &bool)"/>

resnum: add a chainbreak at the given position. Specifically, add the CUTPOINT_LOWER variant type to the given residue and a CUTPOINT_UPPER to resnum + 1.
change_foldtree: add a jump at the cut site.
find_automatically: find cutpoints automatically according to the distance between subsequent C and N atoms.
distance_cutoff: the distance cutoff between subsequent C and N atoms at which to decide that a cutpoint exists.
remove: if true remove the chainbreak from the specified position rather than add it.

Autogenerated Tag Syntax Documentation:

XRW TO DO

<AddChainBreak name="(&string;)" remove="(false &bool;)"
        change_foldtree="(true &bool;)" change_conformation="(true &bool;)"
        resnum="(&string;)" find_automatically="(&bool;)"
        distance_cutoff="(2.5 &real;)" />

remove: Residue numbering (pdb); provide this or resnum
change_foldtree: Add chainbreak as new jump in fold tree.
change_conformation: Add chainbreak as chain ending in pose conformation.
resnum: Residue numbering (pdb); provide this or resnum
find_automatically: Automatically find chain breaks
distance_cutoff: Distance cutoff past which chain breaks will be automatically assigned

AddChainBreak

AddChainBreak

See Also