MultistageRosettaScripts
M.R.S. Jargon
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Table of Contents
A lot of the Stage options are relatively verbose but their behaviors are not necessarily clear based on the names alone. In order to help the names make more sense, this page explains the vocabulary I had in my head while writing these options.
Trajectory
A trajectory is the sequence of movers and filters that a single pose experiences.
Input Struct
For Stage 1, every input file defined in the <Job> tag(s) is a single input struct.
For Stages 2+, every result from the previous stage is a single input struct.
I attempted to denote them pictorally below by placing black stars at the beginning of each stage.
Result
The poses that are generated by a stage are that stage's results.
Instance
An instance is a single stage for a single pose.
See Also
- Multistage Rosetta Scripts
- Introductory RosettaScripting Tutorial
- Advanced RosettaScripting Tutorial
- Scripting Documentation: The Scripting Documentation home page
- Getting Started: A page for people new to Rosetta
- Application Documentation: Links to documentation for a variety of Rosetta applications