constraints Directory Reference

Directory dependency graph for constraints:

Files
file	AmbiguousConstraint.cc
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousConstraint.fwd.hh
file	AmbiguousConstraint.hh
	contains declarations for a type of constraint that holds multiple other
file	AmbiguousNMRConstraint.cc
	contains declarations for a type of constraint that holds a number of constraints
file	AmbiguousNMRConstraint.fwd.hh
file	AmbiguousNMRConstraint.hh
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	AmbiguousNMRDistanceConstraint.cc
file	AmbiguousNMRDistanceConstraint.fwd.hh
file	AmbiguousNMRDistanceConstraint.hh
file	AngleConstraint.cc
	Definition of AngularConstraints.
file	AngleConstraint.fwd.hh
file	AngleConstraint.hh
file	AtomPairConstraint.cc
file	AtomPairConstraint.fwd.hh
file	AtomPairConstraint.hh
file	BackboneStubConstraint.cc
file	BackboneStubConstraint.fwd.hh
file	BackboneStubConstraint.hh
file	BackboneStubLinearConstraint.cc
file	BackboneStubLinearConstraint.fwd.hh
file	BackboneStubLinearConstraint.hh
file	BasicConstraintCreators.cc
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	BasicConstraintCreators.hh
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	BigBinConstraint.cc
file	BigBinConstraint.hh
file	BoundConstraint.cc
file	BoundConstraint.fwd.hh
	forward declaration
file	BoundConstraint.hh
file	ConstantConstraint.cc
file	ConstantConstraint.hh
file	Constraint.cc
file	Constraint.fwd.hh
file	Constraint.hh
	Base class definition for Constraint class hierarchy.
file	ConstraintCreator.cc
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	ConstraintCreator.fwd.hh
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	ConstraintCreator.hh
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	ConstraintEnergyContainer.cc
	Constraints Energy Container class implementation.
file	ConstraintEnergyContainer.fwd.hh
	Constraints Energy Container class declaration.
file	ConstraintEnergyContainer.hh
	Constraints Energy Container class declaration.
file	ConstraintFactory.cc
	Factory for creating various types of constraints.
file	ConstraintFactory.hh
	Factory for creating various types of constraints.
file	ConstraintGraph.cc
	Constraints Energy Container class declaration.
file	ConstraintGraph.fwd.hh
	Constraints Energy Graph class forward declaration.
file	ConstraintGraph.hh
	Constraints Energy Container class declaration.
file	ConstraintIO.cc
file	ConstraintIO.hh
file	Constraints.cc
file	Constraints.fwd.hh
file	Constraints.hh
file	ConstraintsEnergy.cc
	Constraints Energy Method declaration.
file	ConstraintsEnergy.fwd.hh
	Constraints Energy Method forward declaration.
file	ConstraintsEnergy.hh
	Constraints Energy Method declaration.
file	ConstraintsEnergyCreator.hh
	Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
file	ConstraintSet.cc
file	ConstraintSet.fwd.hh
file	ConstraintSet.hh
file	CoordinateConstraint.cc
file	CoordinateConstraint.hh
file	CstMinimizationData.hh
	A cacheable data wrapper for ConstraintsOPs for use in minimization.
file	DihedralConstraint.cc
file	DihedralConstraint.fwd.hh
file	DihedralConstraint.hh
file	DihedralPairConstraint.cc
	Restrain a pair of residues to take the same torsion angles.
file	DihedralPairConstraint.hh
	Restrain a pair of residues to take the same torsion angles.
file	DistancePairConstraint.cc
	Restrain a pair of residues to take the same AtomPair constraint of another pair.
file	DistancePairConstraint.hh
	Restrain a pair of residues to take the same torsion angles.
file	DOF_Constraint.fwd.hh
file	DOF_Constraint.hh
file	FabConstraint.cc
	This class is specific to antibodies and penalizes presence of non-cdr residues.
file	FabConstraint.fwd.hh
	This class is specific to antibodies and penalizes presence of residues flanking.
file	FabConstraint.hh
	This class is specific to antibodies and penalizes presence of residues flanking.
file	KofNConstraint.cc
	meta constraint where N constraints declared
file	KofNConstraint.fwd.hh
	meta constraint where N constraints declared
file	KofNConstraint.hh
	meta constraint where N constraints declared
file	LocalCoordinateConstraint.cc
file	LocalCoordinateConstraint.hh
file	MultiConstraint.cc
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	MultiConstraint.fwd.hh
file	MultiConstraint.hh
	contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
file	NamedAtomPairConstraint.cc
file	NamedAtomPairConstraint.fwd.hh
file	NamedAtomPairConstraint.hh
file	NonResidueTypeConstraint.cc
file	NonResidueTypeConstraint.fwd.hh
file	NonResidueTypeConstraint.hh
	implements favor_non_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
file	ResidueTypeConstraint.cc
file	ResidueTypeConstraint.fwd.hh
file	ResidueTypeConstraint.hh
	implements favor_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
file	ResidueTypeLinkingConstraint.cc
file	ResidueTypeLinkingConstraint.fwd.hh
	constrainting two residues to be the same type, based on
file	ResidueTypeLinkingConstraint.hh
	implements favor_native_residue constraints, assigning an energy bonus to a residue if it matches the identity within the constraint object
file	SequenceProfileConstraint.cc
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
file	SequenceProfileConstraint.fwd.hh
file	SequenceProfileConstraint.hh
	This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
file	SequenceProfileConstraintCreator.hh
	Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
file	SiteConstraint.cc
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.fwd.hh
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraint.hh
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.cc
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.fwd.hh
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	SiteConstraintResidues.hh
	This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
file	util.cc
	utility functions for defining and using constraints.
file	util.hh
	Utility functions for defining and using constraints.