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file | APBSWrapper.cc |
| APBSWrapper class definition.
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file | APBSWrapper.fwd.hh |
| APBSWrapper forward delcaration.
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file | APBSWrapper.hh |
| APBSWrapper class declaration.
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file | AtomVDW.cc |
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file | AtomVDW.fwd.hh |
| Statistically derived rotamer pair potential class declaration.
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file | AtomVDW.hh |
| Statistically derived rotamer pair potential class declaration.
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file | CenHBPotential.cc |
| Smooth, differentiable version of centroid hbond term.
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file | CenHBPotential.fwd.hh |
| Smooth, differentiable version of centroid hbond term.
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file | CenHBPotential.hh |
| Smooth, differentiable version of centroid hbond term.
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file | CenRotEnvPairPotential.cc |
| CenRot version of cen pair/env.
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file | CenRotEnvPairPotential.fwd.hh |
| CenRot version of cen pair.
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file | CenRotEnvPairPotential.hh |
| CenRot version of cen pair.
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file | ChemicalShiftAnisotropy.cc |
| Uses NMR CSA for scoring (Bertram R et al J of Magn Reson 147, 9-16)
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file | ChemicalShiftAnisotropy.fwd.hh |
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file | ChemicalShiftAnisotropy.hh |
| Uses NMR CSA for scoring.
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file | constants.hh |
| core::scoring package constants
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file | ContextGraph.cc |
| Context graph class.
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file | ContextGraph.fwd.hh |
| Context graph class forward declaration.
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file | ContextGraph.hh |
| Context graph class declaration.
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file | ContextGraphFactory.cc |
| Context graph class factory implementation.
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file | ContextGraphFactory.fwd.hh |
| Context graph class factory forward declaration.
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file | ContextGraphFactory.hh |
| Context graph factory class declaration.
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file | ContextGraphTypes.hh |
| Context graph type enumeration.
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file | DenseEnergyContainer.cc |
| A container for storing all-against-all energies as the upper triangle of a matrix.
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file | DenseEnergyContainer.fwd.hh |
| A container interface for storing and scoring long range energies.
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file | DenseEnergyContainer.hh |
| A container for storing all-against-all energies as the upper triangle of a matrix.
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file | DerivVectorPair.fwd.hh |
| Class for storing a pair of derivative vectors, f1 and f2, used in our internal-geometry minimization algorithm.
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file | DerivVectorPair.hh |
| Class for storing a pair of derivative vectors, f1 and f2, used in our internal-geometry minimization algorithm.
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file | DipolarCoupling.cc |
| Uses NMR DC for scoring (Bertram R et al J of Magn Reson 147, 9-16)
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file | DipolarCoupling.fwd.hh |
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file | DipolarCoupling.hh |
| Uses NMR DC for scoring.
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file | DockingScoreFunction.cc |
| ScoreFunction class definition.
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file | DockingScoreFunction.fwd.hh |
| core::scoring::DockingScoreFunction forward declarations
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file | DockingScoreFunction.hh |
| Symmetric Score function class.
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file | Energies.cc |
| Energies class to store cached energies and track the residue neighbor relationships.
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file | Energies.fwd.hh |
| Energies forward declarations header.
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file | Energies.hh |
| Energies class.
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file | EnergiesCacheableDataType.hh |
| enum for the DataCache within the Energies class
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file | EnergyGraph.cc |
| Energy graph class implementation.
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file | EnergyGraph.fwd.hh |
| Energy graph class forward declaration.
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file | EnergyGraph.hh |
| Energy graph class declaration.
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file | EnergyMap.cc |
| Vector of scores implementation.
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file | EnergyMap.fwd.hh |
| Vector of scores forward declaration.
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file | EnergyMap.hh |
| Vector of scores declaration.
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file | EnvPairPotential.cc |
| Statistically derived rotamer pair potential class implementation.
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file | EnvPairPotential.fwd.hh |
| Statistically derived rotamer pair potential class implementation.
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file | EnvPairPotential.hh |
| Statistically derived rotamer pair potential class implementation.
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file | GenBornPotential.cc |
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file | GenBornPotential.fwd.hh |
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file | GenBornPotential.hh |
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file | interpolation_util.hh |
| Useful function for interpolation...
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file | LREnergyContainer.cc |
| A container interface for storing and scoring long range energies.
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file | LREnergyContainer.fwd.hh |
| A container for storing and scoring long range energies forward declaration.
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file | LREnergyContainer.hh |
| A container interface for storing and scoring long range energies.
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file | Membrane_FAPotential.cc |
| Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
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file | Membrane_FAPotential.fwd.hh |
| Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
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file | Membrane_FAPotential.hh |
| Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
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file | MembranePotential.cc |
| Membrane Potential - Base Scoring Methods for LowRes Energy Function.
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file | MembranePotential.fwd.hh |
| Membrane Potential - Base Scoring Methods for LowRes Energy Function.
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file | MembranePotential.hh |
| Membrane Potential - Base Scoring Methods for LowRes Energy Function.
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file | MembraneTopology.cc |
| MembraneTopology.
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file | MembraneTopology.fwd.hh |
| Membrane Topology.
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file | MembraneTopology.hh |
| MembraneTopology.
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file | MinimizationData.cc |
| A container class for use by certain EnergyMethods during derivative and.
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file | MinimizationData.fwd.hh |
| Forward declaration of the container class for use by certain EnergyMethods.
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file | MinimizationData.hh |
| A container class for use by certain EnergyMethods during derivative and.
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file | MinimizationGraph.cc |
| Minimization graph class implementation.
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file | MinimizationGraph.fwd.hh |
| Minimization graph class forward declaration.
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file | MinimizationGraph.hh |
| Minimization graph class declaration.
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file | MinScoreScoreFunction.cc |
| ScoreFunction class definition. A easy way to deal with the low-res score function problem in replica docking.
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file | MinScoreScoreFunction.fwd.hh |
| core::scoring::MinScoreScoreFunction forward declarations
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file | MinScoreScoreFunction.hh |
| Symmetric Score function class.
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file | NeighborList.cc |
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file | NeighborList.fwd.hh |
| Foward declaration of NeighborList class and owning pointer typedefs.
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file | NeighborList.hh |
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file | NeighborList.tmpl.hh |
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file | OmegaTether.cc |
| OmegaTether potential class implementation.
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file | OmegaTether.fwd.hh |
| Omega Tether potential class forward delcaration.
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file | OmegaTether.hh |
| OmegaTether potential class delcaration.
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file | OneToAllEnergyContainer.cc |
| A container interface for storing and scoring long range energies.
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file | OneToAllEnergyContainer.fwd.hh |
| A container interface for storing and scoring long range energies.
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file | OneToAllEnergyContainer.hh |
| A container interface for storing and scoring long range energies.
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file | P_AA.cc |
| Amino acid probability arrays and functions.
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file | P_AA.fwd.hh |
| Amino acid probability arrays and functions.
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file | P_AA.hh |
| Amino acid probability arrays and functions.
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file | PairEPotential.cc |
| pairE knowledge-based potential class
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file | PairEPotential.fwd.hh |
| pairE knowledge-based potential class forward delcaration
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file | PairEPotential.hh |
| pairE knowledge-based potential class delcaration
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file | PeptideBondedEnergyContainer.cc |
| A container interface long range energies for n->n+1 interactions only.
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file | PeptideBondedEnergyContainer.fwd.hh |
| A container interface long range energies for n->n+1 interactions only.
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file | PeptideBondedEnergyContainer.hh |
| A container interface long range energies for n->n+1 interactions only.
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file | PoissonBoltzmannPotential.cc |
| PoissonBoltzmann potential class implementation.
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file | PoissonBoltzmannPotential.fwd.hh |
| PoissonBoltzmann potential class forward delcaration.
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file | PoissonBoltzmannPotential.hh |
| Poisson Boltzmann potential class delcaration.
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file | ProQPotential.cc |
| Membrane Potential.
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file | ProQPotential.fwd.hh |
| Membrane Potential.
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file | ProQPotential.hh |
| ProQembrane Potential.
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file | ProteinTorsion.hh |
| Ramachandran potential class delcaration.
|
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file | Rama2BOffset.cc |
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file | Rama2BOffset.fwd.hh |
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file | Rama2BOffset.hh |
| Rama2BOffset potential class delcaration.
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file | Ramachandran.cc |
| Ramachandran potential class implementation.
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file | Ramachandran.fwd.hh |
| Ramachandran potential class forward delcaration.
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file | Ramachandran.hh |
| Ramachandran potential class delcaration.
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file | Ramachandran2B.cc |
| Neighbor-dependent Ramachandran potential class implementation.
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file | Ramachandran2B.fwd.hh |
| Ramachandran potential class forward delcaration.
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file | Ramachandran2B.hh |
| Neighbor-dependent Ramachandran potential class delcaration.
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file | ResidualDipolarCoupling.cc |
| Uses NMR RDC for scoring.
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file | ResidualDipolarCoupling.fwd.hh |
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file | ResidualDipolarCoupling.hh |
| Uses NMR RDC for scoring.
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file | ResidualDipolarCoupling_Rohl.cc |
| Uses NMR RDC for scoring.
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file | ResidualDipolarCoupling_Rohl.fwd.hh |
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file | ResidualDipolarCoupling_Rohl.hh |
| Uses NMR RDC for scoring.
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file | ResidueNeighborList.cc |
| A container class for use by the Etable and FA_Elec classes for storing lists of atom neighbors.
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file | ResidueNeighborList.fwd.hh |
| Forward declaration of a container class for use by the Etable and FA_Elec classes for storing residue-pair level atom-neighbor information.
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file | ResidueNeighborList.hh |
| A container class for use by the Etable and FA_Elec classes for storing lists of atom neighbors.
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file | rms_util.cc |
| RMS stuff from rosetta++.
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file | rms_util.hh |
| RMS stuff from rosetta++.
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file | rms_util.tmpl.hh |
| RMS stuff from rosetta++ that requires templates.
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file | sasa.cc |
| routines which calculate solvent accessible surface area
|
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file | sasa.hh |
| routines which calculate solvent accessible surface area
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file | ScoreFunction.cc |
| ScoreFunction class definition.
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file | ScoreFunction.fwd.hh |
| core::scoring::ScoreFunction forward declarations
|
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file | ScoreFunction.hh |
| Score function class.
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file | ScoreFunctionFactory.cc |
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file | ScoreFunctionFactory.hh |
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file | ScoreFunctionInfo.cc |
| Score function class descriptor.
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file | ScoreFunctionInfo.fwd.hh |
| Score function class.
|
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file | ScoreFunctionInfo.hh |
| Score function class.
|
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file | ScoreType.cc |
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file | ScoreType.hh |
| Score type enumeration.
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file | ScoreTypeManager.cc |
|
file | ScoreTypeManager.hh |
| Score type enumeration.
|
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file | ScoringManager.cc |
| Scoring manager class.
|
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file | ScoringManager.fwd.hh |
| Scoring manager class header.
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file | ScoringManager.hh |
| Scoring manager class header.
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file | SecondaryStructurePotential.cc |
| Scoring manager class header.
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file | SecondaryStructurePotential.fwd.hh |
| Scoring manager class header.
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file | SecondaryStructurePotential.hh |
| Scoring manager class header.
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file | SecondaryStructureWeights.cc |
| Scoring manager class header.
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file | SecondaryStructureWeights.hh |
| Scoring manager class header.
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file | SmoothEnvPairPotential.cc |
| Smooth, differentiable version of centroid env and pair terms.
|
|
file | SmoothEnvPairPotential.fwd.hh |
| Smooth, differentiable version of centroid env and pair terms.
|
|
file | SmoothEnvPairPotential.hh |
| Smooth, differentiable version of centroid env and pair terms.
|
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file | SS_Info.cc |
| Scoring manager class header.
|
|
file | SS_Info.fwd.hh |
| Data cache forward declarations for the secondary-structure based scores.
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file | SS_Info.hh |
| Scoring manager class header.
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file | SS_Killhairpins_Info.cc |
| Scoring manager class header.
|
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file | SS_Killhairpins_Info.fwd.hh |
| Scoring manager class header.
|
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file | SS_Killhairpins_Info.hh |
| Scoring manager class header.
|
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file | TenANeighborGraph.cc |
| Neighbor graph to represent for each residue the number of other residues within 10 Angstroms.
|
|
file | TenANeighborGraph.fwd.hh |
| Ten Angstrom Neighbor graph class forward declaration.
|
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file | TenANeighborGraph.hh |
| Ten Angstrom Neighbor Graph class declaration.
|
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file | TMscore.cc |
| reimplementation of TMscore sequence-based structure superposition
|
|
file | TMscore.hh |
| reimplementation of TMscore sequence-based structure superposition
|
|
file | TwelveANeighborGraph.cc |
| Neighbor graph to represent for each residue the number of other residues within 12 Angstroms.
|
|
file | TwelveANeighborGraph.fwd.hh |
| Twelve Angstrom Neighbor graph class forward declaration.
|
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file | TwelveANeighborGraph.hh |
| Twelve Angstrom Neighbor Graph class declaration.
|
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file | types.hh |
| core::scoring package type declarations
|
|
file | UnfoldedStatePotential.cc |
| Unfolded state energies based on energies of residues in fragments, definition file.
|
|
file | UnfoldedStatePotential.fwd.hh |
| Unfolded state energies based on energies of residues in fragments, forward declaration.
|
|
file | UnfoldedStatePotential.hh |
| Unfolded state energies based on energies of residues in fragments, declaration (header) file.
|
|
file | util.cc |
| Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
|
|
file | util.hh |
| Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
|
|
file | WaterAdductHBondPotential.cc |
|
file | WaterAdductHBondPotential.fwd.hh |
|
file | WaterAdductHBondPotential.hh |
|