AnchorMovers.cc File Reference

Anchored design movers (protocol-level, perturb, refine) More...

#include <protocols/anchored_design/AnchorMovers.hh>
#include <protocols/anchored_design/AnchorMoversData.hh>
#include <protocols/analysis/LoopAnalyzerMover.hh>
#include <protocols/analysis/InterfaceAnalyzerMover.hh>
#include <protocols/loops/Loops.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/fragment/FragSet.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <protocols/toolbox/task_operations/RestrictByCalculatorsOperation.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <basic/MetricValue.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/simple_moves/RotamerTrialsMover.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicMover.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicWrapper.hh>
#include <protocols/loops/loop_closure/kinematic_closure/KinematicPerturber.hh>
#include <protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/TaskAwareMinMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <basic/options/option.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <numeric/angle.functions.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/AnchoredDesign.OptionKeys.gen.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <numeric/xyzVector.io.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::anchored_design

Functions
static thread_local basic::Tracer	T_design ("protocols.AnchoredDesign.AnchoredDesignMover")
static thread_local basic::Tracer	T_perturb ("protocols.AnchoredDesign.AnchoredPerturbMover")
static thread_local basic::Tracer	T_refine ("protocols.AnchoredDesign.AnchoredRefineMover")
static thread_local basic::Tracer	T_shared ("protocols.AnchoredDesign.Anchor_Movers")
std::string const	protocols::anchored_design::EMPTY_STRING ("")
void	protocols::anchored_design::debug_dump_pose (core::pose::Pose const &pose, core::pose::PoseOP posecopy, std::string const &tag, protocols::moves::MoverOP mover)
	a local helper function, not in the header More...
void	protocols::anchored_design::dump_cutpoint_info (core::pose::Pose const &pose)
	a local helper function for debugging, not in the header More...

Variables
int const	protocols::anchored_design::ANCHOR_TARGET (1)

Detailed Description

Anchored design movers (protocol-level, perturb, refine)

Author

Steven Lewis smlew.nosp@m.i@gm.nosp@m.ail.c.nosp@m.om

Function Documentation

static thread_local basic::Tracer T_design ( "protocols.AnchoredDesign.AnchoredDesignMover"  )

static

Referenced by protocols::anchored_design::AnchoredDesignMover::apply(), protocols::anchored_design::AnchoredDesignMover::calculate_rmsd(), protocols::anchored_design::AnchoredDesignMover::filter(), protocols::anchored_design::AnchoredDesignMover::perturb_anchor(), protocols::anchored_design::AnchoredDesignMover::randomize_input_sequence(), and protocols::anchored_design::AnchoredDesignMover::set_fold_tree_and_cutpoints().

static thread_local basic::Tracer T_perturb ( "protocols.AnchoredDesign.AnchoredPerturbMover"  )

static

Referenced by protocols::anchored_design::AnchoredPerturbMover::apply(), and protocols::anchored_design::AnchoredRefineMover::apply().

static thread_local basic::Tracer T_refine ( "protocols.AnchoredDesign.AnchoredRefineMover"  )

static

Referenced by protocols::anchored_design::AnchoredRefineMover::apply().

static thread_local basic::Tracer T_shared ( "protocols.AnchoredDesign.Anchor_Movers"  )

static

Referenced by protocols::anchored_design::dump_cutpoint_info().