HybridizeFoldtreeDynamic.cc File Reference

A mover to dynamically manipulate fold tree during the template hybridization sampling. More...

#include <protocols/hybridization/HybridizeFoldtreeDynamic.hh>
#include <string>
#include <utility>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <numeric/util.hh>
#include <numeric/xyzVector.hh>
#include <numeric/random/DistributionSampler.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <utility/vector1.hh>
#include <core/types.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/chemical/VariantType.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/loops_main.hh>
#include <core/pose/symmetry/util.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <protocols/simple_moves/symmetry/SymPackRotamersMover.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/util/kinematics_util.hh>
#include <basic/Tracer.hh>
#include <core/conformation/Conformation.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::hybridization

Functions
static thread_local basic::Tracer	TR ("protocols.hybridization.HybridizeFoldtreeDynamic")

Detailed Description

A mover to dynamically manipulate fold tree during the template hybridization sampling.

Detailed: based on Chris Miles's start tree builder

Author

Yifan Song, David Kim

Function Documentation

static thread_local basic::Tracer TR ( "protocols.hybridization.HybridizeFoldtreeDynamic"  )

static