KCluster.cc File Reference

Fast clustering algorithm for large silent file. More...

#include <protocols/toolbox/KCluster.hh>
#include <protocols/toolbox/superimpose.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <core/io/silent/SilentFileData.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/mc.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <utility/exit.hh>
#include <utility/file/FileName.hh>
#include <utility/file/PathName.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/random/random.hh>
#include <iostream>
#include <string>
#include <fstream>
#include <sstream>
#include <cstdio>
#include <algorithm>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::toolbox

Functions
static thread_local basic::Tracer	TR ("protocols.kcluster")
KClusterOP	protocols::toolbox::get_K_cluster_engine (const string &style)
string	protocols::toolbox::file_full_path (string tag)
string	protocols::toolbox::fix_tag_suffix (string str)

Detailed Description

Fast clustering algorithm for large silent file.

Author

Yuan Liu (wenda.nosp@m.o@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.kcluster"  )

static