SymDofMover.cc File Reference

#include <protocols/matdes/SymDofMover.hh>
#include <protocols/matdes/SymDofMoverCreator.hh>
#include <protocols/matdes/SymDofMoverSampler.hh>
#include <protocols/moves/Mover.hh>
#include <core/id/AtomID_Map.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/symmetry/util.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/conformation/symmetry/util.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/VirtualCoordinate.hh>
#include <core/conformation/symmetry/SymmData.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <core/conformation/symmetry/SymDof.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/random/random.hh>
#include <core/kinematics/Jump.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/filters/Filter.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/symmetry.OptionKeys.gen.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::matdes

Typedefs
typedef numeric::xyzVector< Real >	protocols::matdes::Vec
typedef numeric::xyzMatrix< Real >	protocols::matdes::Mat

Functions
static thread_local basic::Tracer	TR ("protocols.matdes.SymDofMover")
static void	protocols::matdes::trans_pose (Pose &pose, Vec const &trans, Size start, Size end)
static void	protocols::matdes::rot_pose (Pose &pose, Mat const &rot, Size start, Size end)
static void	protocols::matdes::rot_pose (Pose &pose, Mat const &rot, Vec const &cen, Size start, Size end)
static void	protocols::matdes::rot_pose (Pose &pose, Vec const &axis, double const &ang, Size start, Size end)
static void	protocols::matdes::rot_pose (Pose &pose, Vec const &axis, double const &ang, Vec const &cen, Size start, Size end)
static void	protocols::matdes::alignaxis (core::pose::Pose &pose, Vec newaxis, Vec oldaxis, Vec cen, Size start, Size end)
numeric::Real	protocols::matdes::get_intra_contacts (Pose const &pose)
void	protocols::matdes::maximize_sub1_contact (Pose &pose, Size const &nf1, Size const &nf2, Vec const &ax1, Vec const &ax2)

Detailed Description

Author

Jacob Bale ( balej.nosp@m.@uw..nosp@m.edu )

Function Documentation

static thread_local basic::Tracer TR ( "protocols.matdes.SymDofMover"  )

static