RB_geometry.cc File Reference

functions that are needed to do geometric functions for rigid body moves More...

#include <protocols/rigid/RB_geometry.hh>
#include <core/pose/Pose.hh>
#include <protocols/scoring/Interface.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <numeric/trig.functions.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzMatrix.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::geometry

Functions
static thread_local basic::Tracer	TR ("protocols.geometry.RB_geometry")
numeric::xyzMatrix_double	protocols::geometry::random_reorientation_matrix (const double phi_range, const double psi_range)
void	protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
void	protocols::geometry::centroids_by_jump (core::pose::Pose const &pose, core::Size const jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd, utility::vector1< bool > ok_for_centroid_calculation)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump. More...
std::pair< core::Vector, core::Vector >	protocols::geometry::centroid_pair_by_jump (core::pose::Pose const &pose, core::Size jump_id)
core::Vector	protocols::geometry::upstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
core::Vector	protocols::geometry::downstream_centroid_by_jump (core::pose::Pose const &pose, core::Size jump_id)
void	protocols::geometry::centroids_by_jump_int (core::pose::Pose const &pose, core::Size jump_id, core::Vector &upstream_ctrd, core::Vector &downstream_ctrd)
	Unweighted centroids of all atoms upstream of the jump vs. all atoms downstream of the jump for interface residues only. needed to calculate rb_centers for fullatom docking - Sid C. More...

Detailed Description

functions that are needed to do geometric functions for rigid body moves

Author

Monica Berrondo

Function Documentation

static thread_local basic::Tracer TR ( "protocols.geometry.RB_geometry"  )

static

Referenced by protocols::geometry::centroids_by_jump_int(), and protocols::geometry::random_reorientation_matrix().