ResolutionSwitcher.cc File Reference

this class will be handled to a SampleProtocol as a control instance More...

#include <protocols/abinitio/ResolutionSwitcher.hh>
#include <protocols/moves/Mover.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/id/SequenceMapping.hh>
#include <core/pose/util.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio

Functions
static thread_local basic::Tracer	tr ("protocols.general_abinitio", basic::t_info)
bool	protocols::abinitio::copy_side_chains (core::pose::Pose &pose, utility::vector1< bool > &needToRepack, core::pose::Pose const &fa_input_pose)

Detailed Description

this class will be handled to a SampleProtocol as a control instance

Detailed: responsibilities:

know which chainbreaks to penalize and close know which jumps to use during sampling, which (if any) to keep after loop-closing supply a JumpMover if jumps should be moved supply a MoveMap supply a "StrictMoveMap": the protocol should not move anything that is dissallowed in strict_movemap(), it should try to move just stuff in movemap() should this class also know how to ramp score terms ? handle the titration of constraints ?

Author

Oliver Lange

Function Documentation

static thread_local basic::Tracer tr ( "protocols.general_abinitio"  , basic::t_info    )

static

Referenced by protocols::abinitio::ResolutionSwitcher::apply(), and protocols::abinitio::copy_side_chains().