util.cc File Reference

initialization protocols for relax More...

#include <protocols/evaluation/PoseEvaluator.fwd.hh>
#include <protocols/evaluation/PoseEvaluator.hh>
#include <core/scoring/constraints/util.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/util.hh>
#include <core/conformation/Residue.hh>
#include <core/io/silent/silent.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/sequence/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/sequence/SequenceAlignment.fwd.hh>
#include <ObjexxFCL/string.functions.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <utility/file/FileName.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/io/silent/SilentStruct.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/evaluation.OptionKeys.gen.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/import_pose/import_pose.hh>
#include <protocols/evaluation/util.hh>
#include <utility/vector0.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::evaluation

Functions
static thread_local basic::Tracer	tr ("protocols.evaluation")
void	protocols::evaluation::register_options ()
	register cmd-line options relevant for evaluators... More...
void	protocols::evaluation::invert_include_residues (Size nres, core::scoring::ResidueSelectionVector const &include_list, core::scoring::ResidueSelectionVector &exclude_list)
void	protocols::evaluation::find_existing_residues (core::pose::PoseCOP pose, std::string tag, core::scoring::ResidueSelection &selection)
void	protocols::evaluation::evaluate_pose (core::pose::Pose &pose, PoseEvaluator &eval, std::ostream &os)

Variables
static bool	protocols::evaluation::options_registered_ =false

Detailed Description

initialization protocols for relax

Detailed:

Contains currently: Classic Abinitio

Author

Oliver Lange

Function Documentation

static thread_local basic::Tracer tr ( "protocols.evaluation"  )

static