ProtectedConformation.cc File Reference

#include <protocols/environment/ProtectedConformation.hh>
#include <core/environment/DofPassport.hh>
#include <protocols/environment/Environment.hh>
#include <protocols/environment/EnvExcn.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/tree/BondedAtom.hh>
#include <core/chemical/ResidueProperties.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/id/TorsionID.hh>
#include <core/kinematics/AtomTree.hh>
#include <boost/bind/bind.hpp>
#include <boost/ref.hpp>
#include <basic/Tracer.hh>
#include <algorithm>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::environment

Functions
static thread_local basic::Tracer	tr ("protocols.environment.ProtectedConformation", basic::t_info)
std::string	protocols::environment::get_mover_name (std::stack< DofPassportCOP > const &unlocks)
void	protocols::environment::bond_lengths (std::map< core::id::DOF_ID, core::Real > &dofs, core::conformation::ConformationOP conf, core::Size seqpos)
void	protocols::environment::bond_angles (std::map< core::id::DOF_ID, core::Real > &dofs, core::conformation::ConformationOP conf, core::Size seqpos)
void	protocols::environment::bond_torsions (std::map< core::id::DOF_ID, core::Real > &dofs, core::conformation::ConformationOP conf, core::Size seqpos)
void	protocols::environment::jump_dofs (std::map< core::id::DOF_ID, core::Real > &dofs, core::conformation::ConformationOP conf, core::Size seqpos)
std::map< core::id::DOF_ID, core::Real >	protocols::environment::collect_dofs (core::Size const seqpos, core::conformation::Conformation const *conf)
	The plan here is to collect all the DoFs in the residue at 'seqpos' and on either side. More...
std::string	protocols::environment::dof_id_to_string (core::id::DOF_ID const &id, ProtectedConformation const &conf)
ResidueOP	protocols::environment::rm_variant (ResidueOP new_rsd, Residue const &old_rsd, core::chemical::ResidueTypeSet const &rsd_set, core::chemical::VariantType variant, core::conformation::Conformation const &conf)
ResidueOP	protocols::environment::add_variant (ResidueOP new_rsd, Residue const &old_rsd, core::chemical::ResidueTypeSet const &rsd_set, core::chemical::VariantType variant, core::conformation::Conformation const &conf)

Detailed Description

Author

Justin R. Porter

Function Documentation

static thread_local basic::Tracer tr ( "protocols.environment.ProtectedConformation"  , basic::t_info    )

static