Embedding.cc File Reference

Methods for Computing Membrane Embeddings. More...

#include <protocols/membrane/geometry/Embedding.hh>
#include <protocols/membrane/geometry/util.hh>
#include <protocols/membrane/geometry/EmbeddingDef.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/membrane/Span.hh>
#include <core/conformation/membrane/Exceptions.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/types.hh>
#include <core/conformation/membrane/types.hh>
#include <basic/Tracer.hh>
#include <numeric/conversions.hh>
#include <numeric/xyz.functions.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <utility/excn/Exceptions.hh>
#include <string>
#include <cstdlib>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::membrane
	protocols::membrane::geometry

Functions
static thread_local basic::Tracer	TR ("protocols.membrane.geometry.Embedding")

Detailed Description

Methods for Computing Membrane Embeddings.

Includes methods for computing membrane embeddings from search, sequence, structure, user input, and smaller component embeddings Last Modified: 7/24/14

Author

Julia Koehler (julia.nosp@m..koe.nosp@m.hler1.nosp@m.982@.nosp@m.gmail.nosp@m..com)

Rebecca Alford (rfalf.nosp@m.ord1.nosp@m.2@gma.nosp@m.il.c.nosp@m.om)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.membrane.geometry.Embedding"  )

static