NcontactsCalculator.cc File Reference

calculate #atom contacts divided by pose.total_residue() in a given pose More...

#include <protocols/fldsgn/NcontactsCalculator.hh>
#include <protocols/fldsgn/topology/SS_Info2.hh>
#include <protocols/fldsgn/topology/Sheet.hh>
#include <protocols/fldsgn/topology/StrandPairing.hh>
#include <protocols/fldsgn/topology/util.hh>
#include <basic/MetricValue.hh>
#include <core/conformation/Atom.hh>
#include <core/conformation/Residue.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <cmath>
#include <core/chemical/AtomType.hh>
#include <utility/options/BooleanVectorOption.hh>

Classes
class	protocols::fldsgn::MyAtom

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::fldsgn

Functions
static thread_local basic::Tracer	tr ("protocols.fldsgn.NcontactsCalculator")

Detailed Description

calculate #atom contacts divided by pose.total_residue() in a given pose

Detailed: If two atom, each of which belongs to different residues, are within a

given distance, condist_( default 6.0A ), the two atoms are defined as contact pair. The residues the atoms belong to are close ( isep_residue_ = 4 ) with each other along sequence, the contact pair is ignored.

Author

Nobuyasu Koga ( nobuy.nosp@m.asu@.nosp@m.uw.ed.nosp@m.u )

Function Documentation

static thread_local basic::Tracer tr ( "protocols.fldsgn.NcontactsCalculator"  )

static

Referenced by protocols::fldsgn::NcontactsCalculator::lookup().