SnugDock.cc File Reference

Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization. More...

#include <protocols/antibody/snugdock/SnugDock.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/CDRsMinPackMin.hh>
#include <protocols/antibody/RefineOneCDRLoop.hh>
#include <protocols/docking/DockingProtocol.hh>
#include <protocols/docking/DockMCMCycle.hh>
#include <protocols/docking/DockTaskFactory.hh>
#include <protocols/moves/ChangeFoldTreeMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/simple_moves/RepackSidechainsMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody

Functions
static thread_local basic::Tracer	TR ("protocols.antibody.SnugDock")
std::ostream &	protocols::antibody::operator<< (std::ostream &out, SnugDock const &)

Detailed Description

Dock and antigen to an antibody while optimizing the rigid body orientation of the VH and VL chains and performing CDR loop minimization.

Author

Jianqing Xu ( xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om )

Brian D. Weitzner ( brian.nosp@m..wei.nosp@m.tzner.nosp@m.@gma.nosp@m.il.co.nosp@m.m )

Function Documentation

static thread_local basic::Tracer TR ( "protocols.antibody.SnugDock"  )

static