MembraneAbinitio.cc File Reference

ab-initio fragment assembly protocol for membrane proteins More...

#include <protocols/abinitio/MembraneAbinitio.hh>
#include <protocols/simple_moves/GunnCost.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/MembraneTopology.hh>
#include <core/scoring/MembranePotential.hh>
#include <core/scoring/MembranePotential.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/ProteinSilentStruct.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/WhileMover.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <utility/vector1.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <numeric/numeric.functions.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/option_macros.hh>
#include <cstdlib>
#include <core/fragment/FragSet.hh>
#include <core/io/silent/ProteinSilentStruct.tmpl.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.fwd.hh>

Classes
class	protocols::abinitio::AllResiduesChanged
	(helper) functor class which keeps track of initial phi/psi values. calls of operator ( pose ) compare the initial phi/psi values More...

Namespaces
	ObjexxFCL
	Application level code for relax-type protocols.
	ObjexxFCL::format
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio

Functions
static thread_local basic::Tracer	tr ("protocols.membrane.abinitio", basic::t_info)

Detailed Description

ab-initio fragment assembly protocol for membrane proteins

Detailed:

Contains currently: Membrane Abinitio

Author

Bjorn Wallner (copied some time ago from ClassicAbinitio.cc of Oliver Lange )

Function Documentation

static thread_local basic::Tracer tr ( "protocols.membrane.abinitio"  , basic::t_info    )

static

Referenced by protocols::abinitio::MembraneAbinitio::add_spanning_region(), protocols::abinitio::MembraneAbinitio::apply(), protocols::abinitio::MembraneAbinitio::do_stage1_cycles(), protocols::abinitio::MembraneAbinitio::do_stage3_cycles(), protocols::abinitio::MembraneAbinitio::do_stage3b_cycles(), protocols::abinitio::MembraneAbinitio::do_stage4_cycles(), protocols::abinitio::MembraneAbinitio::set_default_scores(), and protocols::abinitio::MembraneAbinitio::set_score_weight().